Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1812 ATGATTGAAGGTGAATTTGAGGAATCGTTGATTATTTTTGTGTTGTGGGTTGGTGCTATTTTGGTGTGTTTGGTGATGGGGATGAGGAATGATGCACAGAAGCAACAGCTTCTTCATCAGGGTAATGGTGGTGCTGGTGCTGGTGGTGGCAGAACCAACGGCTTCATTCCAAGTTCTTTCCGTGCTCTCTCTAGCTACCTCAGAATTGTTTCCTCTGGTGCTTCCACTGTTGCACGTTCTGCTGCATCGGTTGCATCATCCATTGTGGAGAGGGATGATGACCCTGACCATGATCAGGTTATCTGGGCTGGGTTTGACAAGTTAGAGAGTGAGGGTGAAGTTATTCAACAAGTACTTCTTCTAGGTTATCGATCTGGATTCCAGGTTTGGCATGTCGATGAATCAAACAATGTTCGAGACCTGGTTTCCAGACATGATGGTCCTGTTTCGTTTATGCAAATGGTACCTAATCCAATTGCGTCTAAGAAATCAGAAGACAAGTATGCAAACAGTCGCCAGCTGTTGGTAGTTTGTACTGATGGGTTCTTTGCTGGAAGTAACAATGTTCAGGATGGGTCGACCACCCCTTACAATGGAAGCACTACAAACTCCCATGACCAAATAAATGGAAGCTATCTGCCAACTACCGTTCGGTTTTATTCTATGAAATCCCAATCTTACGTTCATGTACTGAAGTTTAGATCAGTTGTTTATTCTGTGAGGTGCAGTTCTCGGGTAGTTGCGGTTTCTCAGTCCACTCAGATACACTGTTTTGATGCTACCACATTAGAAAGGGAATATACTTTACTTACCAATCCTATAGTAATGAGTTGCCCTGGTTCCGGAGGCATAGGTTATGGACCACTTGCTGTGGGACCAAGATGGCTTGCTTATAGTGGAAGTCCAGTTGCAATCTCCAATTCAGGACATGTGTGTCCACAACAGTTGACACCTTCTGGAAGCTTTCCTGGTTTTTCTTCTAATGGGAGCTTGATTGCACATTTTGCCAAAGAGTCCAGCAAGCATCTTGCTTCTGGGATTGTGACCCTTGGAGACATGGGGTATAAGAAACTTTCCAGATATTGCTCTGATAGCAATGGTTCATTACAATCTGTAAATTCTGTCTCTAAGGGCAATGGAACTATTAATGGCCATTCAACTGATGCAGATAACATTGGAATGGTTATTGTTAAAGATATTGTCTCAAAAAATGTTATTGCGCAATTCTGGGCCCACAAGAGTCCTATTTCAGCATTGTGCTTTGATCCTAGTGGCACCATTTTAGTGACAGCTTCCATTCAAGGTCATAATATAAATGTTTTCAAGATAATGCCTGCAAGTGAGAATTTGCCAGCATCTGTTACTGGTCCTTCTTATGTTCATTTGTATAGGTTGCAACGCGGCTTTACAAATGCGGTTATACAAGATATCAGTTTCAGTGATGACAGCAAGTGGATTATGATTAGTTCTTCAAGGGGAACTAGCCATCTATTTGCCATAAATCCTCAAGGAGGACATGTAAATATCCAGTCCTTTGATGATAGTTTTACGGCAAAAAATAGTGGATTAGGCACTACAACTAATCATGCAGTTCGTCGGTCTCATAGTTCGGCCATGCAAATGCCTAAACAGCAGAGCCTGTTTGTTACTGGCCCTCCAATCACACTTTCTGTCGTAACCAGAATTAGGAACGGAGCTAATGGCTGGAGAGGCACTGTAAGCGGTGCTGCTGCAGCTGCAACTGGTAGGAAAAATGCCCTTTCTGGGGCCATTGCTTCATCTTTCCGTAACTATAAAGGCAATGAAGGGAACTTTCCTAAGGCAAAGTATCAGCTGTTGGTCTTTTCACCCTCTGGTTCCATGGTACAATATGCTTTGAGGACAATAACTGGTCAAGATTCAGCTGTTGTTTCTGGATTGTCCCCTGCTTATGAATCCATTCCACAGGCTGATACAAGATTAGTAGTTGAGGCCATCCATAAATGGAATATATGTCAGAGTCATAGTCGGAGAGAGCGAGAAGATAATGTAGACATATATGGTGAGAATGGAATTTCAGACGTCAATAAAATATATCCAGAGGAAGTGGGGGAGGAGAAAAACACTAGCCCGAAAATCAAGAATGGAGTTATGAAAGTGAATCTCTGTCTTGAGGAGGAGCATCTTTTGTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCTCAGACTTCATTGTGGGCAAAGCCAGAGATATATTTTCATTCAATGTTGCAAGAATCTACCATAATGGATGAAGAAGCAGCTGCTTCAGGAGGTGAATTTGAGATTGAAAGTATGCCAACTTGCATGATTGAAGCTAGATCGAAAGACTTGGTTCCGATTTTCGACCATATTCAGACTCCAAAAGTACCACAAACAAGGACTCCTGCTATGGATAGCAAGACAAATGAACAGCTGTTGCATCGCAGTTCTAGGCTGGCCGGAAATGGCAGGATTTCACCCAGGACTATTTTGGAATCTCCTGAGAGTGTGACTAAGGCTGGTGATGCTGTTTCTGAATTTAGAAGTGGAATTGAAGGAACTGAGTGGGATAATCATTTGGTGGCATCTGAAACTTTGAACTTTGTAAATAACAATGACACCTTTAGACCAAATACTCAGCATGAGATTGTAAATAATAGAATGGAGCACTTAAACACCGGGGCTCATCTCATGTATGTAAATAGTGACAGAAAGCCTGAAAATGAAGAATCATTTTGA 2742 0.4216 MIEGEFEESLIIFVLWVGAILVCLVMGMRNDAQKQQLLHQGNGGAGAGGGRTNGFIPSSFRALSSYLRIVSSGASTVARSAASVASSIVERDDDPDHDQVIWAGFDKLESEGEVIQQVLLLGYRSGFQVWHVDESNNVRDLVSRHDGPVSFMQMVPNPIASKKSEDKYANSRQLLVVCTDGFFAGSNNVQDGSTTPYNGSTTNSHDQINGSYLPTTVRFYSMKSQSYVHVLKFRSVVYSVRCSSRVVAVSQSTQIHCFDATTLEREYTLLTNPIVMSCPGSGGIGYGPLAVGPRWLAYSGSPVAISNSGHVCPQQLTPSGSFPGFSSNGSLIAHFAKESSKHLASGIVTLGDMGYKKLSRYCSDSNGSLQSVNSVSKGNGTINGHSTDADNIGMVIVKDIVSKNVIAQFWAHKSPISALCFDPSGTILVTASIQGHNINVFKIMPASENLPASVTGPSYVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGHVNIQSFDDSFTAKNSGLGTTTNHAVRRSHSSAMQMPKQQSLFVTGPPITLSVVTRIRNGANGWRGTVSGAAAAATGRKNALSGAIASSFRNYKGNEGNFPKAKYQLLVFSPSGSMVQYALRTITGQDSAVVSGLSPAYESIPQADTRLVVEAIHKWNICQSHSRREREDNVDIYGENGISDVNKIYPEEVGEEKNTSPKIKNGVMKVNLCLEEEHLLYISEAELQMHEAQTSLWAKPEIYFHSMLQESTIMDEEAAASGGEFEIESMPTCMIEARSKDLVPIFDHIQTPKVPQTRTPAMDSKTNEQLLHRSSRLAGNGRISPRTILESPESVTKAGDAVSEFRSGIEGTEWDNHLVASETLNFVNNNDTFRPNTQHEIVNNRMEHLNTGAHLMYVNSDRKPENEESF* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1812 913 Gene3D - 110 521 IPR015943 GO:0005515
Gso12g1812 913 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 28 889 IPR045142 GO:0006914
Gso12g1812 913 Pfam Breast carcinoma amplified sequence 3 551 787 IPR022175 -
Gso12g1812 913 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 28 889 - -
Gso12g1812 913 SUPERFAMILY WD40 repeat-like 118 501 IPR036322 GO:0005515
Gso12g1812 913 SMART WD40_4 402 442 IPR001680 GO:0005515
Gso12g1812 913 SMART WD40_4 458 499 IPR001680 GO:0005515
Gso12g1812 913 SMART WD40_4 224 259 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1812 Gso-Chr12 41843271 41849172 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1812 - - gmx:100784596 1596.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1812 12 41843271 41849172 Gso11g3051 11 46344968 46351768 GST
Gso12g1812 12 41843271 41849172 Gso12g1128 12 15967650 15974950 PCT
Gso12g1812 12 41843271 41849172 Gso6g2216 6 42803127 42808884 PCT
Gso12g1128 12 15967650 15974950 Gso12g1812 12 41843271 41849172 PCT
Gso6g2216 6 42803127 42808884 Gso12g1812 12 41843271 41849172 PCT