Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1128 ATGAGTAAGAATGATGGCCAGAAACCACAGCATCTTCTTCTTGGAGGTGTTGCAGCTGCTGCTGCTGGCAGTGGTAGCGGTGGCAGAACCAACAACAATGGATTTATTCCCTCCTTTCGTACTCTCTCTGGTTACCTGAAGATTGTTTCATCTGGTGCTTCTACTGTTGCTCGGTCTGCGGCTTCCTCTTTTGCATCGTCGATTTTGGATAAGGGTGATGCTGCTGACTGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCCAGGGAGAAGTCATGCGGCAAATACTTCTTCTAGGCTATTGGTCCGGTTTCCAGGTTTGGGATGTTAATGATTCAAATAATGTCCGTGACCTAGTTTCCCGACAGGATGGTCCTGTTTCTTTTATGCAAATGGTACCAACTCCAATTGTATCAAAGAGACCAGAGGATAAGTATGCAGGCAAGCATCCATTGTTGGTAATTTGTATGGATGGTGGAGGCAAAACACAAGATGGGTTGGGTGCCACTTGCAAAGGGGGCACTTTAAACCATCATGACCAAGTGAATGGGAACTATCTGCCAACTACTGTTCAATTTTATTCTATGAGGTCCCAATCATATGTTCATGTACTAAAGTTTAGATCAGTTGTTTACTCTGTAAGATGTAGTTCTCGAATAGTAGCCGTTTCTCAAGCCACTCAGATACACTGTTTTTCTGCCACAACTTTAGAAAGAGAGTATACTTTACTTACCAATCCTATAGTCACACCTTGTTTTGGTTCTGGAGGCATTGGCTTTGGACCGCTTGCAGTTGGTCCTAGATGGCTGGCCTATAGTGGAAGCCCAGATGCAACAGCCACTTCTGGGCGTGTCCGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTATTTCTTCAAATGCGAGCTTGGTCGCTCACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGACACTTGGAGATATGGGGTATAAAAAACTTTCCAGATACTGTTCGGAACTTCGCCCAGATAGCAGCAGTTCTATACAATTGGTAAATTCTAGCCCAAAAGGAAATGGAATCGTTAATGGCCATTCAACAGATGCAGATAACATTGGGATGGTCATTGTCCGAGATATAGTCAGTAAAAATGTCGTTTCCCAATTCCGGGCCCACAAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAGTGGCACCATATTGGTGACTGCTTCTGTTCAGGGGCACAATATTAATGTTTTTAAGATAATCCCTGGATATGAGAGAGTGTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCTTGACAAATGCAGTTATTCAAGATATCAGTTTTAGTGCTGATAGCAGGTGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTATTTGCTATAAACCCTCAAGGGGGACCTGTAAATATTCTGTCATGTGACAATAGTTTAACAGAAAAAAATGGTGGATTGGATGTCATGAATAATCAAGCAGTTTGTTGGCCTCATAGTTCAGCCTTAGAAATTTGTAAACCACAGAGCCTCTGTACTGCTGGTCCTCCTATCACACTTTCTGTCGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAAGCACGGTAACTGGTGCTGCTGCAGCTGCAACAAATAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCCGTAACTTTGAAGGCAACAGTACCTTGTATGTTAATGGGAACTATTCCAAGGAAAAGCGTCATCTGTTGGTATTTTCACCCACCGGTTCTATGATACAATATGCTCTGCAGACAATTAACAGTCAAGATTCAGGTGTTGTTTCTGGAGTAACACCTGCGTATGAATCTGCCCCAGCGACTGATGTAAGAGTAGTTGTTGAGCCTATCAAGAAATGGAATATAAGTCAGAGACAAAGTTGGAGAGAGGGAGAAGATAATATTGACATATATGGAGAGAATGTAGTTTCAGACAGCAATAAATTATATTCAGAGGAAGTGAAGAAGGATAATATCATTAGCCCTAAAATGAAGAATGTAGCTGTGAAATGGAATTCCTGTTCTGAGAAAGAGCATCAGTTATATATTTCAGAAGCTGAACTGCAAATGCATCAAGCTAAGACACCATTGTGGGGAAAAACTGGGATATATTTTCATTCAGTGGGTAAAGAGGCTATTCTGATGATGGATGAAGAAGCTGCTTCTGGAGGGGAATTTGAGATTGACAAGATTCCAACTCGTGTAATACAAGCTAGGTCAAAAGACTTGGTTCCAATTTTTGATTATATTCAGACCTCAAAATTTCAACAAATAAGGACTCCTGCTGTGGGTAACGTGTTATATGAACAGCTTCTGCGTCAAAGTTCCTTTGAAAATGGAAGGATTTCAACCAGGGGTTTTTTGAGTTCTCCTGATTGCATACCTAATTCCGAATTTAAAAGTATGATTGAAGGAAGTGAGTGGGGTGATAGTTTGCTTTCAGCAAAAACAAAGGCTTTCGTAAATAAAAACAACACCCTTAAACCAAATACTTGGCCAGAGATTGCAAATAATAGAAGAGAGAACTTAAACATGAATGCTCATCAAATCTTTGTAAATAGTGACAGAAAAGGCCTGAAACTGGAGAATCACTGCAAAGAAAAAGGAGATGAATTTGATTGA 2703 0.4173 MSKNDGQKPQHLLLGGVAAAAAGSGSGGRTNNNGFIPSFRTLSGYLKIVSSGASTVARSAASSFASSILDKGDAADCDRVIWAGFDTLEGQGEVMRQILLLGYWSGFQVWDVNDSNNVRDLVSRQDGPVSFMQMVPTPIVSKRPEDKYAGKHPLLVICMDGGGKTQDGLGATCKGGTLNHHDQVNGNYLPTTVQFYSMRSQSYVHVLKFRSVVYSVRCSSRIVAVSQATQIHCFSATTLEREYTLLTNPIVTPCFGSGGIGFGPLAVGPRWLAYSGSPDATATSGRVRPQHLTPSASFPGISSNASLVAHYAKESSKHLAAGIVTLGDMGYKKLSRYCSELRPDSSSSIQLVNSSPKGNGIVNGHSTDADNIGMVIVRDIVSKNVVSQFRAHKSPISALCFDPSGTILVTASVQGHNINVFKIIPGYERVSASDAGPSYVHLYRLQRGLTNAVIQDISFSADSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKNGGLDVMNNQAVCWPHSSALEICKPQSLCTAGPPITLSVVSRIRNGSNGWRSTVTGAAAAATNRMSSLSGAIASSFRNFEGNSTLYVNGNYSKEKRHLLVFSPTGSMIQYALQTINSQDSGVVSGVTPAYESAPATDVRVVVEPIKKWNISQRQSWREGEDNIDIYGENVVSDSNKLYSEEVKKDNIISPKMKNVAVKWNSCSEKEHQLYISEAELQMHQAKTPLWGKTGIYFHSVGKEAILMMDEEAASGGEFEIDKIPTRVIQARSKDLVPIFDYIQTSKFQQIRTPAVGNVLYEQLLRQSSFENGRISTRGFLSSPDCIPNSEFKSMIEGSEWGDSLLSAKTKAFVNKNNTLKPNTWPEIANNRRENLNMNAHQIFVNSDRKGLKLENHCKEKGDEFD* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1128 900 Pfam Breast carcinoma amplified sequence 3 531 772 IPR022175 -
Gso12g1128 900 Gene3D - 95 497 IPR015943 GO:0005515
Gso12g1128 900 SMART WD40_4 200 235 IPR001680 GO:0005515
Gso12g1128 900 SMART WD40_4 382 422 IPR001680 GO:0005515
Gso12g1128 900 SMART WD40_4 438 479 IPR001680 GO:0005515
Gso12g1128 900 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 29 867 - -
Gso12g1128 900 SUPERFAMILY WD40 repeat-like 192 484 IPR036322 GO:0005515
Gso12g1128 900 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 29 867 IPR045142 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1128 Gso-Chr12 15967650 15974950 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1128 - - gmx:100791837 1745.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1128 12 15967650 15974950 Gso6g2216 6 42803127 42808884 GST
Gso12g1812 12 41843271 41849172 Gso12g1128 12 15967650 15974950 PCT
Gso11g3051 11 46344968 46351768 Gso12g1128 12 15967650 15974950 PCT
Gso12g1128 12 15967650 15974950 Gso12g1812 12 41843271 41849172 PCT
Gso12g1128 12 15967650 15974950 Gso11g3051 11 46344968 46351768 PCT