Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g2200 ATGCGTGCGACGTTGCCCAGCGAATCCAAAGACCGGGGCACCGATCCGTCCCGGTCACCGCTCATTCCAGCGACGGAGAAAAAGCCCGCCGGAGCATCGGCATCGGAGAAGCTATGCATCGACGAGATGCTGCAGAAGTACTGCGGCGAGTTCGGGCGGTGGCAGCTGAAGCACTTCATCTTAACGAGTCTGGCGTGGGCGTTGGAGGCGTTCCACACGATGGTTATCATATTCGCGGACCGCGAGCCGGAGTGGCAGTGCCTCGACGGCGCGGCCGGGTCGGGATGCGACCCGGCCGCGAAGAACGTGTGCCGGTTCGAACCGGGCTCGTGGAAGTGGGTCGGGGACTCCACGGTGGCGGAGTGGGGGCTTTTTTGCGGTGACAAGTTTAAGGTTGGACTGGTTCAGGCCGTATTCTTCGGCGGCTGCATGATCGGTGCTGGAATATTCGGTCACCTCTCAGACTCATTTCTCGGAAGAAAAGGGTCACTCACAGTGGTCTGTGCCCTAAACACCGTATTTGGAACCCTAACGGCCTTTTCTCCCAGCTACTCCTTCTATGTCCTCTTCCGCCTCCTCACCGGCTGCAGCACCGGTGGTGTCGGCCTCTGTGCCTTCGTCCTCGCCACCGAGCCGGTGGGCCCCAAAATGCGCGGTACGGTCGGCATGTCCACCTTCTACTTCTTCTCCTCCGGCATTGCCCTCCTCTCCGCCATCGCCTACATCTTCCCCGCGTGGCGCAATCTCTACATAGTCTCCTCCCTCTCCTCCCTCGTCTTCCTCGTCTTCGTCCTCCCCTTCGTCTCGGAGTCCCCGAGATGGTACCTCGTACGAGGAAGAAAATCGGAGGCCATGAAAATCATGTCCACCATCGCCACCTCCAATGGTAACCACCTTCCACAAGGTGTTATTCTCACCATGGACAACCAAAAACCATTATCATTACCATTATCACCATCATCATTATCATATCATGTGTCAGTGACAACCACTGACACGTGCATGAAAGAACAACATTTATTTAAAGATATTAATCCCTTAAATAAACTTCAGTTATCATGTCAGGTGGCAATGACGGGATCTTTACTTGACGTGATCCGCACGCCAATGACACGTGCCCGATTAGTCCTCGCTGTTGTTATCAACTTCTTATGCTCCGTTGTGTACTATGGATTAAGCCTCAACGTGGTGAACCTCGAGACCAACCTCTACCTCACGGTGATCCTCAACGCTGTCGCGGAGATGCCGGCGTTTATGATAACGGCGATGTTACTCGACCGGTGGGGGAGGAAGCCGTTAACCATAGGAACCTTATGGTTCAGCGGTGCATTTTGCTTTGCGGGGAGCTTGGTGAACAACGTTGGGGTGTGGAAAGGTGTGAGAGTGGTGTGTGGGATTTTGGGGATTTTTGGGATGGCGGGGACTTATAATTTGTTGTTTATTTACACGGCGGAGCTGTTCCCGACGGTGGTGAGGAACGCCGCGCTCGGCTGCGCGACGCAGGCGGCGCAGATGGGTGCCATACTGGCGCCGCTGGTTGTCGTTTTGGGTGGGTCGTTGCCGTTTTTGGTGTTCGCTTTGTGCGGAATAGTTGGGGGCGTTTTCGCGTTTTATCTGCCAGAGACCCTGAACCAACCTCTCTATGATACGTTAACTGGAATGGAGGCCAAGGAAAATACTGCTATCTCAACCAAAGTATGA 1701 0.5485 MRATLPSESKDRGTDPSRSPLIPATEKKPAGASASEKLCIDEMLQKYCGEFGRWQLKHFILTSLAWALEAFHTMVIIFADREPEWQCLDGAAGSGCDPAAKNVCRFEPGSWKWVGDSTVAEWGLFCGDKFKVGLVQAVFFGGCMIGAGIFGHLSDSFLGRKGSLTVVCALNTVFGTLTAFSPSYSFYVLFRLLTGCSTGGVGLCAFVLATEPVGPKMRGTVGMSTFYFFSSGIALLSAIAYIFPAWRNLYIVSSLSSLVFLVFVLPFVSESPRWYLVRGRKSEAMKIMSTIATSNGNHLPQGVILTMDNQKPLSLPLSPSSLSYHVSVTTTDTCMKEQHLFKDINPLNKLQLSCQVAMTGSLLDVIRTPMTRARLVLAVVINFLCSVVYYGLSLNVVNLETNLYLTVILNAVAEMPAFMITAMLLDRWGRKPLTIGTLWFSGAFCFAGSLVNNVGVWKGVRVVCGILGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAAQMGAILAPLVVVLGGSLPFLVFALCGIVGGVFAFYLPETLNQPLYDTLTGMEAKENTAISTKV* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g2200 566 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 351 558 - -
Gso6g2200 566 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 40 314 - -
Gso6g2200 566 SUPERFAMILY MFS general substrate transporter 125 547 IPR036259 -
Gso6g2200 566 MobiDBLite consensus disorder prediction 1 15 - -
Gso6g2200 566 Pfam Sugar (and other) transporter 386 548 IPR005828 GO:0016021|GO:0022857|GO:0055085
Gso6g2200 566 Pfam Sugar (and other) transporter 129 296 IPR005828 GO:0016021|GO:0022857|GO:0055085
Gso6g2200 566 Gene3D MFS general substrate transporter like domains 59 550 IPR036259 -
Gso6g2200 566 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 351 558 - -
Gso6g2200 566 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 40 314 - -
Gso6g2200 566 ProSitePatterns Sugar transport proteins signature 1. 421 437 IPR005829 GO:0016021|GO:0022857|GO:0055085
Gso6g2200 566 ProSiteProfiles Major facilitator superfamily (MFS) profile. 58 544 IPR020846 GO:0022857
Gso6g2200 566 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g2200 Gso-Chr6 42129811 42133142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g2200 10 561 Organic Solute Cotransporters AT3G20660 62.523 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g2200 K08202 - gmx:100814182 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g2200 6 42129811 42133142 Gso6g2200 6 42129811 42133142 ECH
Gso12g1148 12 16947514 16952960 Gso6g2200 6 42129811 42133142 GST
Gso12g1831 12 41997695 42001582 Gso6g2200 6 42129811 42133142 PCT
Gso11g3033 11 46214216 46218778 Gso6g2200 6 42129811 42133142 PCT
Gso6g2200 6 42129811 42133142 Gso12g1831 12 41997695 42001582 PCT
Gso6g2200 6 42129811 42133142 Gso11g3033 11 46214216 46218778 PCT