Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1148 ATGCCAACGACGTCTTCCAGCGAATCCAAAGACCGGAACGCCGATCCGTCCCGGTCACCGCTCATTTCGGCGGCAGAGAAGCCCACCGGAGAGTCGTCAAAGTCGGAGAAGCTATGCATCGATGAGATGCTGCAGAGGTACTGCGGCGAATTCGGGCGCTGGCAGCTGAAGCACTTCATCTTAACGAGCCTGGCGTGGGCGCTGGAGGCGTTCCACACGATGGTGATCATATTCGCGGACCGCGAGCCGGAGTGGCGGTGCCTCGACGGCCCGGCCGGGTTACGGTGCGACCCGGCCGCGAAGAGCGTGTGCCGGCTCGAACCGGGCTCTTGGAAGTGGGTCGGGGACTCCACGGTGGCGGAGTGGGACTTGTTTTGCGGTGACAAGTTTAAGGTTGGGCTGGTTCAGGCCGTCTTCTTCGGCGGCTGCATGATCGGTGCTGGAATATTTGGTCACCTCTCAGACTCATTCCTCGGAAGAAAAGGCTCACTCACAGTGGTCTGTGCCCTAAACACCGTGTTTGGCACCTTAACAGCCTTCTCCCCCAACTACTCCTTCTACGTCCTCTTCCGCCTCCTCACCGGCTGCAGCACCGGTGGCGTCGGCCTCTGCGCCTTCGTCCTCGCCACCGAGCCGGTGGGCCCCAAAATGCGGGGTGCAGTTGGCATGTCCACCTTCTACTTCTTCTCCTCCGGCATCGCCCTCCTCTCCGTCCTTGCCTACATCTTCCCCGCATGGCGCAATCTCTACATTGCCTCCTCCATCCCCTCCCTCCTCTTCCTCGTCTTCGTCCTCCCCTTTATCTCAGAGTCCCCGAGATGGTACCTCGTACGAGGAAGAAAATCGGAGGCCATGAAAATCATGTCCACCATTGCCACCTCCAACGGTAACAACCTTCCACGAGGTGTTGTTCTCACCCTCGACGACCAACCACCACTACTACCTTCGTCACCATTATCATGTCATGTGTCACATGTAGAACATTCCGACACATGCATGAAAGAACAACATTTGTTTGAAAATATTAATCCCCTAAATAGATATCAGTCATCATGTCACGTGGCAGTGACGGGATCTCTACTTGACGTTATCCGCACGCCAATGACACGTGCGCGATTAGTCCTTGCTATTGTTATCAACTTCTTATGCTCGGTGGTGTACTATGGCTTGAGCCTCAACGTGGTGAACCTAGAGACCAACCTCTACCTCACCGTGATCCTCAACGCCGTCGCGGAGATGCCGGCGTTTATGATAACGGCACTCTTACTCGACCGGTGGGGGAGGAAGCCGTTAACCATAGGAACCTTATGGTTCAGCGGCGCGTTTTGCTTGGCGGGGAGTTTGGTGAACAACGTTGGGGTGTGGAAAGGTGTGAGAATGGTGTGTGGGATTTTGGGAATTTTTGGGATGGCGGGGACTTATAATTTGTTGTTTATTTACACGGCGGAGCTGTTCCCGACGGTGGTGAGGAACGCCGCGCTCGGCTGCGCCACGCAGGCGGCGCAGATGGGGGCCATATTGGCGCCTCTGGTCGTCGTTTTGGGAGGGTCGTTGCCGTTTATGGTGTTTGCTCTGTGCGGAATAGGTGGTGGCGTTTTCGCGTTTTATCTGCCAGAGACGCTGAATCAACCTCTCTATGATACGTTAACGGGAATGGAGGCCAAGGAAAGTAATGCTACCTCAACCAATGTATGA 1695 0.5575 MPTTSSSESKDRNADPSRSPLISAAEKPTGESSKSEKLCIDEMLQRYCGEFGRWQLKHFILTSLAWALEAFHTMVIIFADREPEWRCLDGPAGLRCDPAAKSVCRLEPGSWKWVGDSTVAEWDLFCGDKFKVGLVQAVFFGGCMIGAGIFGHLSDSFLGRKGSLTVVCALNTVFGTLTAFSPNYSFYVLFRLLTGCSTGGVGLCAFVLATEPVGPKMRGAVGMSTFYFFSSGIALLSVLAYIFPAWRNLYIASSIPSLLFLVFVLPFISESPRWYLVRGRKSEAMKIMSTIATSNGNNLPRGVVLTLDDQPPLLPSSPLSCHVSHVEHSDTCMKEQHLFENINPLNRYQSSCHVAVTGSLLDVIRTPMTRARLVLAIVINFLCSVVYYGLSLNVVNLETNLYLTVILNAVAEMPAFMITALLLDRWGRKPLTIGTLWFSGAFCLAGSLVNNVGVWKGVRMVCGILGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAAQMGAILAPLVVVLGGSLPFMVFALCGIGGGVFAFYLPETLNQPLYDTLTGMEAKESNATSTNV* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1148 564 Gene3D MFS general substrate transporter like domains 113 548 IPR036259 -
Gso12g1148 564 MobiDBLite consensus disorder prediction 1 30 - -
Gso12g1148 564 ProSiteProfiles Major facilitator superfamily (MFS) profile. 58 542 IPR020846 GO:0022857
Gso12g1148 564 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 40 315 - -
Gso12g1148 564 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 349 557 - -
Gso12g1148 564 ProSitePatterns Sugar transport proteins signature 1. 419 435 IPR005829 GO:0016021|GO:0022857|GO:0055085
Gso12g1148 564 SUPERFAMILY MFS general substrate transporter 53 545 IPR036259 -
Gso12g1148 564 Pfam Sugar (and other) transporter 129 295 IPR005828 GO:0016021|GO:0022857|GO:0055085
Gso12g1148 564 Pfam Major Facilitator Superfamily 387 539 IPR011701 GO:0022857|GO:0055085
Gso12g1148 564 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 40 315 - -
Gso12g1148 564 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 349 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1148 Gso-Chr12 16947514 16952960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1148 10 560 Organic Solute Cotransporters AT3G20660 63.538 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1148 K08202 - gmx:100805613 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1148 12 16947514 16952960 Gso6g2200 6 42129811 42133142 GST
Gso12g1831 12 41997695 42001582 Gso12g1148 12 16947514 16952960 PCT
Gso11g3033 11 46214216 46218778 Gso12g1148 12 16947514 16952960 PCT
Gso12g1148 12 16947514 16952960 Gso12g1831 12 41997695 42001582 PCT
Gso12g1148 12 16947514 16952960 Gso11g3033 11 46214216 46218778 PCT