Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1578 ATGCCTCACGCCAAAACCTCCCAATCGCAGCAGAACATAAAGCAGAGGGTACTCACGTGCCTAACGAAGCTCTCAGACCGCGACACACAAGCCGCTGGAGCCACCGAGCTCGAGTCCATCGCGCGTACCATAGACCCACACTCGGTTCCAGTGTTCCTCTCTTGCATCCACTCCACCGACTCCTCCGACAAAACCCCCGTCCGCAAGCAATGCGTGCACCTCGTCGCCACCCTCTCCCACGCGCACGGCGACGCGCTCTCGCCGTTTCTGTCCAAAATCATCGCCTGCCTCGTCCGCCGCCTCCGCGACCCGGACTCCTCGGTCCGGGCCGCGTGCGCCGACTCCGTCGGCGCACTCTCGGCGTGCGTCACGAGGCAGCCTTTCGCCGCCGCGTTCCTCAAGCCGCTCGCGGAGGCGCTTTTCACGGAGCAGGACCCGAGCTCGCAGGCTGGAGCCGCGCTATGTCTGGCCTCCGCGGTTGAAGCGGCTCCGGATCCGGACCCTGCCAGGCTTGCGAGGCTGCTTCCGAGGCTTGAGAGGCTGATCAAGAGCAAGGTGTTTAGGGCTAAGCCTGCACTGCTGGTGCTTGTTGGAAGCGTCGTCGAGGCGCGCGGCGCCTCTAGTGGCGTCGCGTTGAAGAATTTGGTTCCTTGCCTTGTGGAGGCTCTGGGGAGTGAGGACTGGGCCACCAGGAAGGGCGCGGCGGAGGCGTTGAAGAAGCTCGCGAGCGTGGAGAAGGACCTCTTGCCGGAGTTCAAGGGTGGATGCTTGAAGGTTTTCGAGAATCGGCGATTTGATAAGGTAAAGTTGGTTCGGGAGGTTATGAATGAGATGTTGGAGGCATGGAAGCAGATTCCTGATGTTTCGGATGAATTCTCTCCACCTCCTCAATCGCAGTTGTCTTCAAAGGAGAATGCAAGTGATGGGCGCTATCCTCCTGTCTCTCAAAATTCATGTAGTCCGGGTTCTGTAATGAGTAAATTGAGGAAGAAGTCGAGCCAAGTTAGCAAATCAACTCCACCAGATACATCTGCTGTTAGGAATGCTAAAAGGAGTGCATTAAGTGGCGATCGGATGAGTTCAGGTGTTCTGCAGAAACTGAACCATAACCATTGGGATGTTCGAATTGCTGTGTCAAATGTTTCTGATTGTGGTGAACGTCAGCAGAAGGATGAAGATGTTTTGGAAAGAAGAAAAAAGGATAGAAGCAGATTTTTTAAGCCGGAAACAAAACGGGCTCTATTCGATAAAAATTCTGATGACAAGATGCATAAATTTGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCTTGTTCTGAAGAGAGTCAAGACTCAGATCCTGTCTGTAATGTAACTAAGGATCTACATAGGAATGACAAAGAGAGTGAGGAATTATCTTTGATTCGTGCTCAATTAGTTCAAATTGAGAAGCAGCAGTCTAGTCTGCTTGATCTTGTACAGAAATTCATGGGGAGCTCTGAAAATGGAATGCGTACTTTAGAGACTCGTGTGCATGGCCTTGAGTTGGCATTGGATGAGATCTCTTATGATTTGGCTGTATCAAGTGGAAGGATAACTAAGTTTGATGCTCCTAAGCATACTTGTTGCATGCTGCCTGGTGCTGAATTTTTAAGCTCCAAATTCTGGAAGAAAACACAGGGCCGATATTCATCGTACCGGTTCTCTAGAACTGGTAGCACTCCATTACTACCTTCCAGTCATTACAGAGCTAACAGGAATGCCGAATCTAATAGGTCGACAAGCCACAGACTTGGGGTCCACGGTGATGGAGGCTTCACCACTAATCCTCTGGCAGAGATTAAAATTAATTCAAGGGAGATTTCAGGCTCTGCCAGATCAGAGCTAGCTTGA 1872 0.5176 MPHAKTSQSQQNIKQRVLTCLTKLSDRDTQAAGATELESIARTIDPHSVPVFLSCIHSTDSSDKTPVRKQCVHLVATLSHAHGDALSPFLSKIIACLVRRLRDPDSSVRAACADSVGALSACVTRQPFAAAFLKPLAEALFTEQDPSSQAGAALCLASAVEAAPDPDPARLARLLPRLERLIKSKVFRAKPALLVLVGSVVEARGASSGVALKNLVPCLVEALGSEDWATRKGAAEALKKLASVEKDLLPEFKGGCLKVFENRRFDKVKLVREVMNEMLEAWKQIPDVSDEFSPPPQSQLSSKENASDGRYPPVSQNSCSPGSVMSKLRKKSSQVSKSTPPDTSAVRNAKRSALSGDRMSSGVLQKLNHNHWDVRIAVSNVSDCGERQQKDEDVLERRKKDRSRFFKPETKRALFDKNSDDKMHKFGGSKAGSRVVPCSEESQDSDPVCNVTKDLHRNDKESEELSLIRAQLVQIEKQQSSLLDLVQKFMGSSENGMRTLETRVHGLELALDEISYDLAVSSGRITKFDAPKHTCCMLPGAEFLSSKFWKKTQGRYSSYRFSRTGSTPLLPSSHYRANRNAESNRSTSHRLGVHGDGGFTTNPLAEIKINSREISGSARSELA* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1578 623 MobiDBLite consensus disorder prediction 287 361 - -
Gso6g1578 623 MobiDBLite consensus disorder prediction 570 590 - -
Gso6g1578 623 Coils Coil 458 478 - -
Gso6g1578 623 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 617 IPR033337 GO:0005874|GO:0008017
Gso6g1578 623 SUPERFAMILY ARM repeat 8 378 IPR016024 -
Gso6g1578 623 MobiDBLite consensus disorder prediction 570 597 - -
Gso6g1578 623 Pfam HEAT repeat 215 244 IPR000357 GO:0005515
Gso6g1578 623 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 8 617 - -
Gso6g1578 623 SMART TOG_3 36 274 IPR034085 -
Gso6g1578 623 MobiDBLite consensus disorder prediction 291 361 - -
Gso6g1578 623 MobiDBLite consensus disorder prediction 427 447 - -
Gso6g1578 623 Gene3D - 3 384 IPR011989 -
Gso6g1578 623 Pfam HEAT-like repeat 67 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1578 Gso-Chr6 16375927 16380755 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1578 - - gmx:100776414 1194.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1578 6 16375927 16380755 Gso6g1578 6 16375927 16380755 ECH
Gso4g1486 4 43587276 43593003 Gso6g1578 6 16375927 16380755 GST
Gso5g0272 5 2845518 2848974 Gso6g1578 6 16375927 16380755 PCT
Gso17g0792 17 7369560 7372983 Gso6g1578 6 16375927 16380755 PCT
Gso6g1578 6 16375927 16380755 Gso5g0272 5 2845518 2848974 PCT
Gso6g1578 6 16375927 16380755 Gso17g0792 17 7369560 7372983 PCT