Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1486 ATGCCTCGCGCCACAACAACCCAATCGCAGAACATAAAGCAGAGGGTACTCACGTGCCTAACAAAGCTCTCAGATCGCGACACACAAGTCGCAGGAGCCAACGAGCTCGAGTCCATCGCGCGCACCCTGGACCCGCACTCTGTTCCAGTCTTCCTCTCGTGCATCCACTCCACCGACGCCTCCGACAAAACCCCCGTTCGCAAGCAATGCGTGCACCTCGTGGCCACGCTCTCCCACGCCCACGGCGACGCGCTCTCCCCCTTCCTCTCCAAAATCCTCGCCTGCCTTGTCCGCCGCCTCCGCGACCCGGACTCCTCGATCCGGGCCGCGTGCGCCGACTCCGTCGGCGCACTCTCGGCGCGCGTCACGAGGCAACCGTTCGCCGCGGCGTTCCTGAAGCCGCTGGCGGAGGCGCTGTTCACTGAGCAGGACCCGAGCTCGCAGGCTGGAGCCGCTCTCTGTCTGGCCTCCGCGATTGAAGCGGCTCCGGATCCGGACCCGGCCAGGCTGGCCAGGTTGCTCCCGAGGCTCGAGAGGCTGATCAAGAGCAAGGTGTTTAGGGCCAAGCCAGCGCTGCTGGCGCTCGTTGGAAGCGTTGTCGAGGCGCGCGGCGCGACGAGCGGCGCCGCGTTGAGGAGTTTGGTTCCTTGTCTTCTGGAGGCGCTGGGGAGTGAGGACTGGGCCACTAGGAAGGGCGCGGCGGAGGCGTTGAAGAAGCTCGCGAGCGTGGAGAGGGACCTCTTGGCGGAGTTCAAGGGTGGATGCTTGAAAGTGTTTGAAGATCGCCGATTTGATAAGGTAAAGTTGGTTCGGGAGGTTATGAATCAGATGTTGGAGGCATGGAAGCATATTCCTGATGTTTCAGATGAGTTCTCTCCACCTCCTCAATTGCAGTTGTCTTCAAAAGAGAATGCAAGTGATGGGCGCTATCCTCCTGTCTCTCAAAATTCATGCAGTCCAGGTTCTGTAATGAGTAAATTGAGGAAGAAATCGAGCCCAGCTAGCAAATCAACTCCACCAGATAGATCTGCTGTTAGGAATGCAAAAAAGAGTGCATTAAGTGGCGATAGGATGGGTTCAGGTGTTTTGCAGAAACTGAACCATAACCATTGGGATGTTCGAATTGCTGTGTCAAATGTTCCTGATCGTGGTGAACGCCGGCAGAAGGATGAAGATGTTTTGGAAAGAAGCAAAAAGGATAAAAGCAGATTTTTTAAGCAGGAAACAAAACGGGCTCTATTTGATAAAAATTCTGATGACAAGATGCATAAATCTGGTGGGTCCAAAGCTGGATCTCGTGTGGTTCCTTGTTCTGAAGAGAGTCAAGACTCAGGTCCTGTCTGTAATGTAACTAAGGATCTCCATAGGAATGACAAAGAGAGTGAAGAATTATCTTTGATTCGTGCTCAATTAGTTCAAATTGAAAAGCAGCAGTCAAGTCTGCTTGATCTTGTACAGAAATTCATGGGGAACTCTGAAAATGGAATGCATACTTTAGAGACTCGTGTGCATGGCCTGGAGTTAGCATTGGATGAGATCTCTTATGATTTGGCTGTATCAAGTGGAAGGATATCTAAATCTGATGCTCCTAAGAATACTTGTTGCCTGCTACCTGGTGCTGAATTTTTAAGCACCAAATTCTGGAAGAAAACACAGGGCCGGTATTCATCGTACCGATTCTCTAGAACTGGTAGCACTCCATTACTAGCTTCCAGTCATTACAGAGCTAACAGGAATGCCAAATCTAATAGGTTGGCAAGCCATAGATTTAGGGTCCATGGTGATGGAAGCTTCATGACTAATCCTCTGGCAGAGATTAAAATTAATTCAAGGGAGATTTCAGGCTCTGCAAGATCAGAGCTAGCTTGA 1869 0.5169 MPRATTTQSQNIKQRVLTCLTKLSDRDTQVAGANELESIARTLDPHSVPVFLSCIHSTDASDKTPVRKQCVHLVATLSHAHGDALSPFLSKILACLVRRLRDPDSSIRAACADSVGALSARVTRQPFAAAFLKPLAEALFTEQDPSSQAGAALCLASAIEAAPDPDPARLARLLPRLERLIKSKVFRAKPALLALVGSVVEARGATSGAALRSLVPCLLEALGSEDWATRKGAAEALKKLASVERDLLAEFKGGCLKVFEDRRFDKVKLVREVMNQMLEAWKHIPDVSDEFSPPPQLQLSSKENASDGRYPPVSQNSCSPGSVMSKLRKKSSPASKSTPPDRSAVRNAKKSALSGDRMGSGVLQKLNHNHWDVRIAVSNVPDRGERRQKDEDVLERSKKDKSRFFKQETKRALFDKNSDDKMHKSGGSKAGSRVVPCSEESQDSGPVCNVTKDLHRNDKESEELSLIRAQLVQIEKQQSSLLDLVQKFMGNSENGMHTLETRVHGLELALDEISYDLAVSSGRISKSDAPKNTCCLLPGAEFLSTKFWKKTQGRYSSYRFSRTGSTPLLASSHYRANRNAKSNRLASHRFRVHGDGSFMTNPLAEIKINSREISGSARSELA* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1486 622 Coils Coil 457 477 - -
Gso4g1486 622 Pfam HEAT repeat 214 243 IPR000357 GO:0005515
Gso4g1486 622 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 8 616 - -
Gso4g1486 622 MobiDBLite consensus disorder prediction 405 450 - -
Gso4g1486 622 Gene3D - 1 380 IPR011989 -
Gso4g1486 622 MobiDBLite consensus disorder prediction 293 344 - -
Gso4g1486 622 MobiDBLite consensus disorder prediction 405 427 - -
Gso4g1486 622 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 616 IPR033337 GO:0005874|GO:0008017
Gso4g1486 622 SMART TOG_3 35 273 IPR034085 -
Gso4g1486 622 SUPERFAMILY ARM repeat 8 280 IPR016024 -
Gso4g1486 622 MobiDBLite consensus disorder prediction 289 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1486 Gso-Chr4 43587276 43593003 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1486 - - gmx:100778310 1182.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1486 4 43587276 43593003 Gso6g1578 6 16375927 16380755 GST
Gso5g0272 5 2845518 2848974 Gso4g1486 4 43587276 43593003 PCT
Gso17g0792 17 7369560 7372983 Gso4g1486 4 43587276 43593003 PCT
Gso4g1486 4 43587276 43593003 Gso5g0272 5 2845518 2848974 PCT
Gso4g1486 4 43587276 43593003 Gso17g0792 17 7369560 7372983 PCT