Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1567 ATGGAATACCAATACCACCCATCATCTTATGGCGTCTCTTCCTCTTCTCACTCCAACCACCATCAACAAGGGTCAACAACACCGAAATCCCTCTCTTCACAACGCAGCCTCGTCTCAGTCCCCTCCCTCAACCACCACCTCCACGCCCCGAATTCCACCGTCTACCACCACTGCCTCACAACCCTCAAGGGTCACACCTCCTCCTACATCTCCTCCTTAACCCTCTCCGGCAAATTCCTCTACACCGGCTCCTCCGACCGCGAAATCCGCTCCTGGAACCGCATCCCAGAAAACTCATCAAACAACAATAACAATAGCAACACCGTACTCACGGGAAACGGTGCTGTTAAGTCGTTAGTAATTCAGTCAAACAAACTTTTCAGCGCGCATCAAGACCACAAAATCCGTGTCTGGAAAATAAGCACTAACAACAACAACGATAACGATCATGACCAGAAATATACACACGTGGCCACACTCCCCACCCTCGGCGACCGCGCCTCGAAAATCTTGATCCCCAAGAACCAGGTACAAATCCGAAGGCACAAGAAATGCACCTGGGTTCACCACGTGGACACCGTCTCGGCTTTGGCCCTGTCCAGAGACGGAACCTTGCTGTACTCTGTCTCTTGGGACAGAACGCTCAAAATCTGGAAAACGAAAGACTTCACGTGCCTGGAGTCCCTCGCCAACGCGCACGACGACGCCATCAACGCTGTCGCAGTCTCCTACGATGGGTGCGTCTACACCGGATCAGCGGACAAGAAAATCAAGGTGTGGAAGAAATTCGCAGGAGAAAAGAAACACACTTTAATAGAAACCTTGGAGAAGCACAACTCTGGGGTTAATGCTTTGGCTCTAAGCAGCGACGAGAATGTTGTATATTCTGGTGCATGCGATAGGGCTATTTTGGTTTGGGAGAAGAAAGAGGGTGATGATGGGAAAATGGGGGTGGTGGGTGCTTTAAGGGGACACACCAAGTCCATTTTGTGTTTATCTGTTGTGGCGGATTTGGTGTGTAGTGGCTCTGCGGATACAACGATTAGGATTTGGAGAGGTTGTGTTGATTCGCATGAATACTCTTGTTTAGCGGTTTTGGAAGGGCACAGGGCTTCGATTAAGTGCATAAGCGCAGTGGTTGACCACTGCAACAACAACAACAACAACACATCGCAGTCCGAAGCATTATTATCTTTTCTAGTCTATAGTGGCGGTTTGGACTGCGACATTAAGGTGTGGCAGATTTTACTTCCGGCTAGCTAA 1263 0.4964 MEYQYHPSSYGVSSSSHSNHHQQGSTTPKSLSSQRSLVSVPSLNHHLHAPNSTVYHHCLTTLKGHTSSYISSLTLSGKFLYTGSSDREIRSWNRIPENSSNNNNNSNTVLTGNGAVKSLVIQSNKLFSAHQDHKIRVWKISTNNNNDNDHDQKYTHVATLPTLGDRASKILIPKNQVQIRRHKKCTWVHHVDTVSALALSRDGTLLYSVSWDRTLKIWKTKDFTCLESLANAHDDAINAVAVSYDGCVYTGSADKKIKVWKKFAGEKKHTLIETLEKHNSGVNALALSSDENVVYSGACDRAILVWEKKEGDDGKMGVVGALRGHTKSILCLSVVADLVCSGSADTTIRIWRGCVDSHEYSCLAVLEGHRASIKCISAVVDHCNNNNNNTSQSEALLSFLVYSGGLDCDIKVWQILLPAS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1567 420 CDD WD40 58 414 - -
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Gso6g1567 420 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 13 418 - -
Gso6g1567 420 SMART WD40_4 359 414 IPR001680 GO:0005515
Gso6g1567 420 SMART WD40_4 315 352 IPR001680 GO:0005515
Gso6g1567 420 SMART WD40_4 222 261 IPR001680 GO:0005515
Gso6g1567 420 SMART WD40_4 180 219 IPR001680 GO:0005515
Gso6g1567 420 SMART WD40_4 268 307 IPR001680 GO:0005515
Gso6g1567 420 SMART WD40_4 103 139 IPR001680 GO:0005515
Gso6g1567 420 SMART WD40_4 55 93 IPR001680 GO:0005515
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
Gso6g1567 420 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 418 IPR045182 -
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 270 IPR001680 GO:0005515
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 307 IPR001680 GO:0005515
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Gso6g1567 420 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Gso6g1567 420 Pfam WD domain, G-beta repeat 273 306 IPR001680 GO:0005515
Gso6g1567 420 Pfam WD domain, G-beta repeat 361 413 IPR001680 GO:0005515
Gso6g1567 420 Pfam WD domain, G-beta repeat 320 351 IPR001680 GO:0005515
Gso6g1567 420 Pfam WD domain, G-beta repeat 58 93 IPR001680 GO:0005515
Gso6g1567 420 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Gso6g1567 420 Gene3D - 177 417 IPR015943 GO:0005515
Gso6g1567 420 Gene3D - 42 176 IPR015943 GO:0005515
Gso6g1567 420 SUPERFAMILY WD40 repeat-like 57 415 IPR036322 GO:0005515
Gso6g1567 420 MobiDBLite consensus disorder prediction 7 39 - -
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 351 IPR001680 GO:0005515
Gso6g1567 420 MobiDBLite consensus disorder prediction 1 39 - -
Gso6g1567 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1567 Gso-Chr6 16187693 16189150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1567 232 366 Acyl Lipid Metabolism Gene Families AT3G18860 27.397 1.16e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1567 - - gmx:100815608 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1567 6 16187693 16189150 Gso6g1567 6 16187693 16189150 ECH
Gso4g1499 4 43795638 43797083 Gso6g1567 6 16187693 16189150 GST
Gso5g0280 5 2924875 2929510 Gso6g1567 6 16187693 16189150 PCT
Gso17g0785 17 7306647 7308321 Gso6g1567 6 16187693 16189150 PCT
Gso6g1567 6 16187693 16189150 Gso5g0280 5 2924875 2929510 PCT
Gso6g1567 6 16187693 16189150 Gso17g0785 17 7306647 7308321 PCT