Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1499 ATGGAATACCAATACCCATCATCTTATAGCGTCTCTTCCTCTTCTCACTCCAACCACCATCAGCAAGGCTCAACAACGAAATCCCTCTCTTCATCACAACGCAGCCTTATCTCAGTCCCCTCCCTCAACCACCACCACCTCCACACCCCAAATTCCTCCGTCTACCACCACTGCCTCACAACCCTCAAGGGCCACACCTCCTACATCTCCTCCTTAACCCTCTCCGGCAAAATCCTCTACACCGGCTCCTCCGACCGCGAAATCCGGTCCTGGAACCGCATCCCTGAAAACTCATCAACCGACAACAGTAATAATAATAACAATAACAGCACCGTACTCGCCGGTAAGGGTGCTGTTAAGTCGTTAGTAATCCAATCCAACAAACTCTTCAGCGCGCACCAAGACAACAAAATCCGCGTCTGGAAAATAAGCAACAACGACGACCACCACCACCAGAAATACACACACGTGGCCACGCTCCCCACCCTCGGCGATCGCGCGTCTAAAATCTTGATCCCCAAGAACAAGGTCCAAATCCGAAGGCACAAGAAATGCACGTGGGTTCACCACGTTGACACCGTCTCTGCCCTCGCCCTGTCCAAAGACGGAGCCTTGCTATACTCCGTCTCTTGGGACAGAACACTCAAAATCTGGAAAACCAAAGACTTCACGTGCTTGGAGTCCCTCGCCAATGCCCACGACGACGCCATCAACGCGGTCGCAGTCTCCTACGATGGGTGCGTCTACACGGGATCAGCGGACAAAAGAATCAAGGTGTGGAAGAAATTCGCAGGAGAAAAGAAACACACCTTAATAGAGACCTTGGAGAAGCACAACTTTGGGGTGAATGCGTTGGCTCTAAGCAGCGACGAGAATGTTCTATATTCTGGTGCATGCGATAGGGCTATTTTGGTTTGGGAGAAAGAGGGTGATGATGGGAAAATGGGGGTGGTGGGTGCGTTAAGGGGGCACACTATGTCCATTTTGTGTTTATCTGTTGCTGCGGATTTGGTGTGTAGTGGCTCTGCGGATAAAACGATTAGAGTTTGGAGAGGTTCTGTTGATGCGCATGAATATTCTTGTTTAGCTGTTTTGGAAGGGCACAGGGGTTCAATCAAGTGCATAAGCGCAGTGGTTGACCACTGCAACAACACCAACACATGGTCGCAGTCGGAAGCATTATCTTTTCTAGTCTATAGTGGCGGTTTGGACTGCCACATTAAGGTCTGGCAGATTTTAGTTCCTGCTATCTAA 1254 0.5008 MEYQYPSSYSVSSSSHSNHHQQGSTTKSLSSSQRSLISVPSLNHHHLHTPNSSVYHHCLTTLKGHTSYISSLTLSGKILYTGSSDREIRSWNRIPENSSTDNSNNNNNNSTVLAGKGAVKSLVIQSNKLFSAHQDNKIRVWKISNNDDHHHQKYTHVATLPTLGDRASKILIPKNKVQIRRHKKCTWVHHVDTVSALALSKDGALLYSVSWDRTLKIWKTKDFTCLESLANAHDDAINAVAVSYDGCVYTGSADKRIKVWKKFAGEKKHTLIETLEKHNFGVNALALSSDENVLYSGACDRAILVWEKEGDDGKMGVVGALRGHTMSILCLSVAADLVCSGSADKTIRVWRGSVDAHEYSCLAVLEGHRGSIKCISAVVDHCNNTNTWSQSEALSFLVYSGGLDCHIKVWQILVPAI* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1499 417 Gene3D - 177 414 IPR015943 GO:0005515
Gso4g1499 417 MobiDBLite consensus disorder prediction 1 35 - -
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 350 - -
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 92 IPR001680 GO:0005515
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 307 IPR001680 GO:0005515
Gso4g1499 417 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 12 415 - -
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
Gso4g1499 417 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 415 IPR045182 -
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 270 IPR001680 GO:0005515
Gso4g1499 417 Pfam WD domain, G-beta repeat 360 410 IPR001680 GO:0005515
Gso4g1499 417 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Gso4g1499 417 Pfam WD domain, G-beta repeat 319 350 IPR001680 GO:0005515
Gso4g1499 417 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Gso4g1499 417 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Gso4g1499 417 Pfam WD domain, G-beta repeat 273 306 IPR001680 GO:0005515
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Gso4g1499 417 SMART WD40_4 222 261 IPR001680 GO:0005515
Gso4g1499 417 SMART WD40_4 268 307 IPR001680 GO:0005515
Gso4g1499 417 SMART WD40_4 55 92 IPR001680 GO:0005515
Gso4g1499 417 SMART WD40_4 358 411 IPR001680 GO:0005515
Gso4g1499 417 SMART WD40_4 106 142 IPR001680 GO:0005515
Gso4g1499 417 SMART WD40_4 314 351 IPR001680 GO:0005515
Gso4g1499 417 SMART WD40_4 180 219 IPR001680 GO:0005515
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 92 - -
Gso4g1499 417 SUPERFAMILY WD40 repeat-like 57 412 IPR036322 GO:0005515
Gso4g1499 417 Gene3D - 7 176 IPR015943 GO:0005515
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Gso4g1499 417 CDD WD40 58 411 - -
Gso4g1499 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 350 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1499 Gso-Chr4 43795638 43797083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1499 232 372 Acyl Lipid Metabolism Gene Families AT3G18860 28.289 1.20e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1499 - - gmx:100777242 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1499 4 43795638 43797083 Gso6g1567 6 16187693 16189150 GST
Gso5g0280 5 2924875 2929510 Gso4g1499 4 43795638 43797083 PCT
Gso17g0785 17 7306647 7308321 Gso4g1499 4 43795638 43797083 PCT
Gso4g1499 4 43795638 43797083 Gso5g0280 5 2924875 2929510 PCT
Gso4g1499 4 43795638 43797083 Gso17g0785 17 7306647 7308321 PCT