Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0280 ATGGAACACAGCGCATCCTTCAACAATAACAGCCTCTCTTCACAACGCAGCCTCGCTTCAGTCCCTTCCCTCAACTCACACTCTCACCTCTTCATTCCTTCCACTACCTCTCACTCGTGCCTCACCACTCTCAAACCCCACACTTCCTCCTCCGTATACATCTCCTGCCTTACCCTCGCCGGCAACTTGCTCTACACTGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACTCATTTCATCCAAAAACCAACCACCACCAACAACAACGTTGTAATTGCAGGAAAAGGTGCTGTGAAGTCCATAGTGGTCCACTCCGACAAACTCTTCACCGCCCACCAAGACAACAAAATCCGCGTCTGGAGAGTCACAAACCTCGAACACGACCAGAACCAGAAGTACACACGTGTGGCCACACTCCCCACGCTCGGCGACCGCTTGACCAAACTCCTGCTCCCGAAAAACCAGGTGCGCATTCGCCGCCACAAGAAGTGCACCTGGGTTCACCATGTGGACACCGTCTCCTCCCTCGCACTGTCCAAAGACGGAACCTTTTTGTACTCCGTTTCATGGGACAGAACAATTAAGGTTTGGCGAACCAAAGACTTCGCGTGCTTGGAGTCCGTGCGCGACGCGCACGACGACGCCATCAACGCGGTCGCAGTCTCCTACGATGGGTACGTCTACACCGGATCCGCGGACAAGAGAATTAGGGTTTGGAAAAAACTCGAAGGGGAGAAGAAACATTCACTAGTGGACACGTTGGAGAAACACAACTCTGGGATTAACGCGTTGGCGCTTAGCGCCGATGGCTCTGTGTTGTATTCTGGTGCATGCGATAGGTCAATATTGGTTTCGGAGAAGGGTAAAAATGGTAAATTGTTAGTGGTTGGTGCTTTGAGGGGGCATACTAGGTCGATTTTGTGTTTGGCTGTGGTTTCGGATTTGGTGTGTAGTGGTTCGGAGGACAAAACGGTGCGTATTTGGAGAGGGGTTCAGAAGGAGTATTCGTGTTTAGCTGTTTTGGAAGGGCATAGGAGTCCGATTAAGAGCTTAACTGCTGCGGTTGATCGTAGTGAACAAGACCCTAATTCAGAAGAACCGTCTTTTCTTGTCTATAGTGCCAGTTTGGACTGTGATGTTAAGAAATGCCAATTTTGCCATCTGCGTTGGATAAAGCTTTTATAG 1191 0.5038 MEHSASFNNNSLSSQRSLASVPSLNSHSHLFIPSTTSHSCLTTLKPHTSSSVYISCLTLAGNLLYTGSSDREIRSWNHTHFIQKPTTTNNNVVIAGKGAVKSIVVHSDKLFTAHQDNKIRVWRVTNLEHDQNQKYTRVATLPTLGDRLTKLLLPKNQVRIRRHKKCTWVHHVDTVSSLALSKDGTFLYSVSWDRTIKVWRTKDFACLESVRDAHDDAINAVAVSYDGYVYTGSADKRIRVWKKLEGEKKHSLVDTLEKHNSGINALALSADGSVLYSGACDRSILVSEKGKNGKLLVVGALRGHTRSILCLAVVSDLVCSGSEDKTVRIWRGVQKEYSCLAVLEGHRSPIKSLTAAVDRSEQDPNSEEPSFLVYSASLDCDVKKCQFCHLRWIKLL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0280 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 251 IPR001680 GO:0005515
Gso5g0280 396 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 386 IPR045182 -
Gso5g0280 396 CDD WD40 40 383 - -
Gso5g0280 396 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 386 - -
Gso5g0280 396 Pfam WD domain, G-beta repeat 299 330 IPR001680 GO:0005515
Gso5g0280 396 Pfam WD domain, G-beta repeat 253 285 IPR001680 GO:0005515
Gso5g0280 396 Pfam WD domain, G-beta repeat 169 199 IPR001680 GO:0005515
Gso5g0280 396 Pfam WD domain, G-beta repeat 207 242 IPR001680 GO:0005515
Gso5g0280 396 Pfam WD domain, G-beta repeat 39 77 IPR001680 GO:0005515
Gso5g0280 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 242 - -
Gso5g0280 396 SUPERFAMILY WD40 repeat-like 29 360 IPR036322 GO:0005515
Gso5g0280 396 SMART WD40_4 336 386 IPR001680 GO:0005515
Gso5g0280 396 SMART WD40_4 86 123 IPR001680 GO:0005515
Gso5g0280 396 SMART WD40_4 161 200 IPR001680 GO:0005515
Gso5g0280 396 SMART WD40_4 294 331 IPR001680 GO:0005515
Gso5g0280 396 SMART WD40_4 37 77 IPR001680 GO:0005515
Gso5g0280 396 SMART WD40_4 249 288 IPR001680 GO:0005515
Gso5g0280 396 SMART WD40_4 203 242 IPR001680 GO:0005515
Gso5g0280 396 Gene3D - 2 158 IPR015943 GO:0005515
Gso5g0280 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 199 - -
Gso5g0280 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Gso5g0280 396 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 330 - -
Gso5g0280 396 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 330 IPR001680 GO:0005515
Gso5g0280 396 Gene3D - 159 390 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0280 Gso-Chr5 2924875 2929510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0280 213 353 Acyl Lipid Metabolism Gene Families AT3G18860 27.517 1.17e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0280 - - gmx:100801906 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0280 5 2924875 2929510 Gso17g0785 17 7306647 7308321 GST
Gso5g0280 5 2924875 2929510 Gso4g1499 4 43795638 43797083 PCT
Gso5g0280 5 2924875 2929510 Gso6g1567 6 16187693 16189150 PCT
Gso4g1499 4 43795638 43797083 Gso5g0280 5 2924875 2929510 PCT
Gso6g1567 6 16187693 16189150 Gso5g0280 5 2924875 2929510 PCT