Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1442 ATGAATAATCAAGCCAAGAATATTGCTACATCATCTTTGTTTGGTCATTCTGGAATGGCCCCACAACCACAACCACACCATCCTAACCCCATTCAGCAATGGAACCATCCAAACCCTTTACTCTCTCAGTCACAGTCACACCCTCAAACCCAATTCCATGGTCTGTTTCAGTTTTCAGAGCCCCAAAGTCAGGTCTTTGCACAAGCTCAGTATGCACAGGCTCAATTGCAGTCTCAGGCTGCACGTGCTCATCCACAAGTACCTCAAACTCTGCCTTTTGCTCACTTGCATAATCTAAAAACTAATACTGCTAATGGTGTATCAAGTCTGGGCACCGGAAGTGCCAAGCGAGCAACCCTAAAGCCCCCGTTGAGGTCTCACAATTCGTTGAATATGAACCAATCCACGCCGTTTAAGGCCACGGAGTTGACCCCAGCTGTTCTGCAAAAGAAGCAAATACCTGAAAAGGTGGCTGCGCTTTTGCCCGAGTCTGCTCTTTACACTCAGTTGCTTGATTTTGAGGCTCAGGTGGATGCTTCTTTGGCCAGGAGAAAGATTGATATACAGGAGACTAAGCTGCCTCCTCATGTTCAGAAAACTCTTCGTGTTTATGTGTTTAATACCTTCTCAAATCATGCTAAAATGGATGCTGATAATAGAAAGGCTGATGATGAATCTTGGTGGTCTCTCAAGATAATTGGAAGGATATTGGAAGATGGTGTGGATTCCATGTCAGGAATTTCACAGGGATCGAGCCCTTTGTACCCGAAGTTCTCTGCATTTTTCAAGAAAATTACCATACTCTTGGATCAAAGCCTTTATCCTGATAATCATGTCACTGTGTGGGATAGTGCTCGTTCCCCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCAGTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCACCACCACTGTCTAAACTTTTAGGGATTGAGGTAGAGACTCGCCCAAGAATAATAGCTACTCTTTCTAACTACGTGAAGTCCAGGAAGCTACAGATCCCAAATGACCCTTCATTCTTCATATGTGATCCTTCTCTACAAATGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTCTCAGAAGTTAGCACAGCATTTGACACAACCACAACCTATACATATGGAGCATAACATCAAGCTTTCTGGACATTCTCCAGCTGTATCTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATATGTCTACATTCTTGGCAGGCTTTGAGAGTCAAAAAGAGATTGAAGCTTATGACGAGGCGATTCGCACCTCCTTAAAGAAGATCCAGGAGCATCATAGAAGACGAGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCGGAGTTTATTGATACTTTGATTGCTTCTCAGAGCAAAGATTTAAAACTTGTTGCTGGAGATGCCAGCCATAATGTTCAAAAGGAACTTCCTTCTGAATTCTTCAATCAACCATGGGTTGAGGATGCTGTCATTCGTTACTTGAACCGCAAATCTGCAGGAAGTGATGCTCATGGACACAACTGA 1602 0.4307 MNNQAKNIATSSLFGHSGMAPQPQPHHPNPIQQWNHPNPLLSQSQSHPQTQFHGLFQFSEPQSQVFAQAQYAQAQLQSQAARAHPQVPQTLPFAHLHNLKTNTANGVSSLGTGSAKRATLKPPLRSHNSLNMNQSTPFKATELTPAVLQKKQIPEKVAALLPESALYTQLLDFEAQVDASLARRKIDIQETKLPPHVQKTLRVYVFNTFSNHAKMDADNRKADDESWWSLKIIGRILEDGVDSMSGISQGSSPLYPKFSAFFKKITILLDQSLYPDNHVTVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSPPLSKLLGIEVETRPRIIATLSNYVKSRKLQIPNDPSFFICDPSLQMVFGEEKMDFTMVSQKLAQHLTQPQPIHMEHNIKLSGHSPAVSACYDIQVDVPFPLEKDMSTFLAGFESQKEIEAYDEAIRTSLKKIQEHHRRRAFFLSFSQSPAEFIDTLIASQSKDLKLVAGDASHNVQKELPSEFFNQPWVEDAVIRYLNRKSAGSDAHGHN* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1442 533 SUPERFAMILY SWIB/MDM2 domain 310 399 IPR036885 -
Gso6g1442 533 ProSiteProfiles SWIB/MDM2 domain profile. 314 391 IPR003121 -
Gso6g1442 533 SMART swib_2 315 394 IPR019835 -
Gso6g1442 533 MobiDBLite consensus disorder prediction 1 48 - -
Gso6g1442 533 MobiDBLite consensus disorder prediction 33 48 - -
Gso6g1442 533 MobiDBLite consensus disorder prediction 104 134 - -
Gso6g1442 533 CDD SWIB_like 321 389 - -
Gso6g1442 533 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 88 531 - -
Gso6g1442 533 MobiDBLite consensus disorder prediction 1 18 - -
Gso6g1442 533 Pfam SWIB/MDM2 domain 318 389 IPR003121 -
Gso6g1442 533 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 88 531 - -
Gso6g1442 533 Gene3D SWIB/MDM2 domain 311 397 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1442 Gso-Chr6 14361865 14364760 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso6g1442 SWIB 9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1442 K11650 - gmx:100802455 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso6g1442 6 14361865 14364760 Gso6g1442 6 14361865 14364760 ECH
Gso4g1648 4 46299690 46302559 Gso6g1442 6 14361865 14364760 GST
Gso5g0396 5 4191334 4194697 Gso6g1442 6 14361865 14364760 PCT
Gso17g1093 17 10398646 10401915 Gso6g1442 6 14361865 14364760 PCT
Gso6g1442 6 14361865 14364760 Gso5g0396 5 4191334 4194697 PCT
Gso6g1442 6 14361865 14364760 Gso17g1093 17 10398646 10401915 PCT