Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1648 ATGAATAATCAAGCCAAGAATATTGCTGCATCATCTTTGTTTGGTCATTCTGGAATGGCCCCACAAAAACACCACCCTAACCCCATTCAGCAGTGGAACCATCCAAACCCTTTACTCTCTCAGTCACAGTCACACCCTCAAACCCAATTCCCTGGTCCGTTTCAGTTTTCAGATCCCCAAAACCAGGTCTTTGCAAAAGCTCAGTATTCACAAGCACATTTGCATTCTCCGGCTGCCCGTGCTCATCCGCAACCTCAGACTCATCCTTTTGCCCACTTGCATAGTGTAAATACTAATACTGCTAATGGTACATCATCTCCGGCCACCGGAAGTGCCAAGCGAGCAACCCCAAAGCCCCCGTTGAGGTCCCACAATTCGTTGAATACGAACCAATCCATGCCGTTTAAGGCCACGGAATTGACCCCAGCTGCTCGGCAAAAGAAGCAAACACCAGAAAAGGTGGCTGCACTTTTGCCCGAGTCTGCTCTTTACACTCAGTTGCTTGATTTTGAGGCTCAGGTGGATGCTGCTTTGGCCAGGAGAAAGATTGATGTACAGGAGGCTAAGCTGCCTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTTAATACCTTCTCAAATCATGCAAAAATGGATGCTGAGAATAGAAAGGCTGATGAATCTTGGTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATGGATTCTGTGTCTGGAACTTCACAGGGATCGAGTCCTTCATACCCGAAGTTCTCTGCATTTTTCAAGAAAATTACCATACTCTTAGATCAAAGCCTTTATCCCAATAATCATGTCATTGTATGGGATAGTGCTCGTTCCCCTACCGAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCACTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACCACTGTCTAAACTTTTAGGGATTGAGGTAGAGACTCGCTCAAGAATAATAGCTACTCTTTTTAACTACGTCAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATATGTGATCCTTCTCTACAAATGGTGTTCGGGGAAGAGAAGATGGATTTCACCATGGTTTCTCAGAAGTTATCACAGCATTTGTCACAACCACGACCTATACATCTAGAGCATAACATCAAGCTTTCTGGACATTCTCCAGCTGTATCTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATATGTCTACATTCTTGGCAGGTTTTGAGAGTCAGAAAGAGATTGAAGCTTATGATGAGGCAATTTGCGGCTCCTTAAAGAAAATCCAGGAGCATCGTAGAAGACGAGCTTTCTTTCTTAGCTTTAGTCAGTATCCAGCAGAGTTTATTGATACTTTGATTTCTTCTGAGAGCAAGGATTTAAAACTTGTTGCTGGAGATGCCAGCCATAATGTTGAAAAGGAGCTTCGTTCTGAATTCTTCAATCAACCATGGGTTGAGGATGCTGTCATTCGTTACCTGAACCGCAAAACTGCAGGAAGTGATGCTCATGGACGCAATTAA 1590 0.434 MNNQAKNIAASSLFGHSGMAPQKHHPNPIQQWNHPNPLLSQSQSHPQTQFPGPFQFSDPQNQVFAKAQYSQAHLHSPAARAHPQPQTHPFAHLHSVNTNTANGTSSPATGSAKRATPKPPLRSHNSLNTNQSMPFKATELTPAARQKKQTPEKVAALLPESALYTQLLDFEAQVDAALARRKIDVQEAKLPPHVQKTLRVYVFNTFSNHAKMDAENRKADESWWSLKITGRILEDGMDSVSGTSQGSSPSYPKFSAFFKKITILLDQSLYPNNHVIVWDSARSPTEQDGFEVKRKGNKEFTALIAIEMNYTPDKFMVSSPLSKLLGIEVETRSRIIATLFNYVKSRKLQSPNDPSFFICDPSLQMVFGEEKMDFTMVSQKLSQHLSQPRPIHLEHNIKLSGHSPAVSACYDIQVDVPFPLEKDMSTFLAGFESQKEIEAYDEAICGSLKKIQEHRRRRAFFLSFSQYPAEFIDTLISSESKDLKLVAGDASHNVEKELRSEFFNQPWVEDAVIRYLNRKTAGSDAHGRN* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1648 529 MobiDBLite consensus disorder prediction 90 112 - -
Gso4g1648 529 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 86 527 - -
Gso4g1648 529 MobiDBLite consensus disorder prediction 13 134 - -
Gso4g1648 529 ProSiteProfiles SWIB/MDM2 domain profile. 310 387 IPR003121 -
Gso4g1648 529 SUPERFAMILY SWIB/MDM2 domain 306 395 IPR036885 -
Gso4g1648 529 CDD SWIB_like 317 385 - -
Gso4g1648 529 Pfam SWIB/MDM2 domain 314 385 IPR003121 -
Gso4g1648 529 SMART swib_2 311 390 IPR019835 -
Gso4g1648 529 MobiDBLite consensus disorder prediction 24 69 - -
Gso4g1648 529 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 86 527 - -
Gso4g1648 529 Gene3D SWIB/MDM2 domain 307 392 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1648 Gso-Chr4 46299690 46302559 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso4g1648 SWIB 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1648 K11650 - gmx:100784907 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1648 4 46299690 46302559 Gso6g1442 6 14361865 14364760 GST
Gso5g0396 5 4191334 4194697 Gso4g1648 4 46299690 46302559 PCT
Gso17g1093 17 10398646 10401915 Gso4g1648 4 46299690 46302559 PCT
Gso4g1648 4 46299690 46302559 Gso5g0396 5 4191334 4194697 PCT
Gso4g1648 4 46299690 46302559 Gso17g1093 17 10398646 10401915 PCT