Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0396 ATGAACAACACCAACCCAACCAAGAATGCTGCAACGCCGTCGTTTTTCACCAACCCTGGAACACCCTCCATCCCCATGAACCACCTTCTCTCCCAAACGCAGCCTCAACCACAAGGTGCCACGTCACACTTCCACGGCCACTTTCAGCTTTCACAACCCCAAACCCACGTGCTCGCACCACAACAACAGCCACACCCTCATCCTCATCCTCAAGTGCACAACAATGCAAACACCAACGCCCACGTGGCAGCACCCACACCTCCCAAGCGTGCAAGTCAGAAACCCCCTTCACGCCCTCAGGGCTCCTCCAACGCCAGCCAATCCTCTGCGTTCAAGACCATGGAACTTACCGTGGCGCCGCCCCGGAAAAAGAGAAGCTTTCCCTATAATAAGGTGGTTCCGGAAAAGGTGGCAAAGCTTGTGCCAGAATCCGCAATCTACGCCAAGTTGCTGGGACTCGAGACTCAAATAGACTCTGCTTTGGCTAGGAAGAAAATCGATGTGCAGGAGAATGTTAGGAACCCTCGCTGTGTTAGGAAAACGCTTAGAGTTTATGTTTACAACACTTTTTCGAATCAGGTGAAAGTGGAGCCTGGGAAGAATGGTGTGGAGGAGCCTTCTTGGGCGCTTAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATTCTGTGGCGGAAGGGATTTCGACGAAGGAATATCCAAAATTCTCGGCTTTTTTCAAGAAGATTACCATATACTTGGATCAGGGTTTGTACCAGGATAACCATGTTGTTGTGTGGGATAGTGCCCGTTCTGCGGCTGCACAGCAGCGCGATGGTTTTGAAGTGAAGAGGAAAGGAGACAAGGAATTCACTGCGGTGGTTAGGATGGCGATGAATTATTCGCCTGACAAGTTTGTGGTTTCTCCGCAACTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCGCGAGCTAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAACTGCAGAGCCCGAATGACCCTTCGTTCTTCATGTGTGACACTTCTCTCCAGAAGGTGTTTGGGGAAGACAAGATGAAATTCTCTGTGGCTTCGCAGAAGATATCGCAGCATTTGTCACAGCCACGGCCTATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATGGTCCAGCCGGAAGTACGTGTTATGATGTGCAGGTTGATGTGCCTCTTCCCCTAGAGAAGGATATGTCTGCATTCTTGGCAAGCACTGAGAGGCACAAAGATATTGATGCTTTTGATGAACTGATCTGTGATTCAATAAAGAAGATTCATGAACATCATAGGAGACGGGCATTTTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCCTTGATCGCTTCTCAGAGCAAGGATCTGAAGCTCGTTGCTGGAGATGTTAGCCAGAATACTGAAAATGAACAATGTGCTGAATTCTACAATCAACCGTGGGTTGAGGATGCTGTTGTTCGCTACCTGACCCGAAAAAATGCTCGAAGTGATGCTCCTGGAAACATCTGA 1542 0.4877 MNNTNPTKNAATPSFFTNPGTPSIPMNHLLSQTQPQPQGATSHFHGHFQLSQPQTHVLAPQQQPHPHPHPQVHNNANTNAHVAAPTPPKRASQKPPSRPQGSSNASQSSAFKTMELTVAPPRKKRSFPYNKVVPEKVAKLVPESAIYAKLLGLETQIDSALARKKIDVQENVRNPRCVRKTLRVYVYNTFSNQVKVEPGKNGVEEPSWALRITGRVLEDGKDSVAEGISTKEYPKFSAFFKKITIYLDQGLYQDNHVVVWDSARSAAAQQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSPQLARVLGVEFDSRARIIAALWHYVKAKKLQSPNDPSFFMCDTSLQKVFGEDKMKFSVASQKISQHLSQPRPIHLEHKIKLSGNGPAGSTCYDVQVDVPLPLEKDMSAFLASTERHKDIDAFDELICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSQNTENEQCAEFYNQPWVEDAVVRYLTRKNARSDAPGNI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0396 513 MobiDBLite consensus disorder prediction 95 114 - -
Gso5g0396 513 SUPERFAMILY SWIB/MDM2 domain 290 379 IPR036885 -
Gso5g0396 513 MobiDBLite consensus disorder prediction 1 115 - -
Gso5g0396 513 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 72 510 - -
Gso5g0396 513 ProSiteProfiles SWIB/MDM2 domain profile. 294 371 IPR003121 -
Gso5g0396 513 Pfam SWIB/MDM2 domain 298 369 IPR003121 -
Gso5g0396 513 SMART swib_2 295 374 IPR019835 -
Gso5g0396 513 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 72 510 - -
Gso5g0396 513 MobiDBLite consensus disorder prediction 68 82 - -
Gso5g0396 513 CDD SWIB_like 301 369 - -
Gso5g0396 513 Gene3D SWIB/MDM2 domain 291 376 IPR036885 -
Gso5g0396 513 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0396 Gso-Chr5 4191334 4194697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso5g0396 SWIB 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0396 K11650 - gmx:100790947 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0396 5 4191334 4194697 Gso17g1093 17 10398646 10401915 GST
Gso5g0396 5 4191334 4194697 Gso4g1648 4 46299690 46302559 PCT
Gso5g0396 5 4191334 4194697 Gso6g1442 6 14361865 14364760 PCT
Gso4g1648 4 46299690 46302559 Gso5g0396 5 4191334 4194697 PCT
Gso6g1442 6 14361865 14364760 Gso5g0396 5 4191334 4194697 PCT