Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1093 ATGAACAACACCAACAACATTAACAACATCAACACCAACCCAACCAAGAATGCCGCAACACCGTCGTTTTTCACCAACCCCGGAGCACCCTCCATCCCCATGAACCACCCACAACCCCACCTTCTCTCACAGACGCAGCCTCAACCACAAGGTGCCACGTCACACTTTCACGGCCACTTTCAGCTTTCACAACCCCAAACCCACGTCGTCGCACAGCAACAACATCAACAACAACAACCACACCCTCACCCACAAGTGCACAACAATGCCAACACCAACGCCCACGTGGCAGCACCCACACCACCCAAGCGTGCAAATCAGAAACCCCCTTCACGCCCTCAAGGCTCCTCCAACGCTACCCAATCCTCTGCGTTCAAGACCATGGAACTCACCGTTGCGCCGCCGCGGAAAAAGAGAAGCTTTCCCGGTAACCTGATTCCAGAAAAAGTGGCCAAGCTTGTTCCAGAATCCGCAATCTACGCCAAGTTGCTCGAACTCGAGACTCAGATAGATTCTGCTTTGGCCAGGAAGAAAATTGATGTGCAGGCGAATGTTAGAAACCCTCGCTGCGTTAGGAAAACGCTTAGAGTTTATGTTTATAACACTTTTTCGAATCAGGTGAAAGTGGAGACTGGGAAGAATGGTGTGGAGGAGCCTTCTTGGGCTCTGAGGATAACTGGAAGGGTGTTGGAAGATGGTAATGGAAAGGATTCTGTGGCGGAAGGAATTTCGACGAAGGAATATCCAAAATTCTCGGCTTTCTTTAAGAAGATTACCATATACTTGGATCAGGGTTTGTACCAGGATAACCATGTTGTTGTGTGGGATAGTGCTCATTCGGCGGCTGCGCAGCAGCGTGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACTGCGGTGGTTAGGATGGCGATGAATTATTCGCCTGACAAGTTTGTGGTTTCACCGCAACTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCGCGCTGCAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGCTGCAGAGTCCCAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAGAGGGTGTTTGGGGAGGAGAAGATGAAATTCTCTGTGGCTTCGCAGAAGATATCGCAGCATTTGTCACACCCGCAGCCTATACACCTGGAGCATAAAATAAAGCTTTCTGGAAATGGTCCAGCCGGAAGTACTTGCTATGATGTGCAGGTTGATGTGCCTCTTCCACTTGAGAAGGATATGTCTGCGTTCTTGGCAAGCACTGAGAGGCACAAAGATATTGATACTTTTGATGAATTGATCTCTGATTCGATAAAGAAGATTCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCCTTGATAGCTTCTCAGAGCAAGGATCTGAAGCTCGTTGCTGGAGATGTGAGCCAGAATACTGAAAATGAACGACGTGCTGAATTCTACAATCAACCGTGGGTTGAGGATGCTGTTATTCGCTACCTGACCCGGAAAAATGCTCGAAGTGATGCTCCTTGA 1578 0.4842 MNNTNNINNINTNPTKNAATPSFFTNPGAPSIPMNHPQPHLLSQTQPQPQGATSHFHGHFQLSQPQTHVVAQQQHQQQQPHPHPQVHNNANTNAHVAAPTPPKRANQKPPSRPQGSSNATQSSAFKTMELTVAPPRKKRSFPGNLIPEKVAKLVPESAIYAKLLELETQIDSALARKKIDVQANVRNPRCVRKTLRVYVYNTFSNQVKVETGKNGVEEPSWALRITGRVLEDGNGKDSVAEGISTKEYPKFSAFFKKITIYLDQGLYQDNHVVVWDSAHSAAAQQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSPQLARVLGVEFDSRCRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSHPQPIHLEHKIKLSGNGPAGSTCYDVQVDVPLPLEKDMSAFLASTERHKDIDTFDELISDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSQNTENERRAEFYNQPWVEDAVIRYLTRKNARSDAP* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1093 525 MobiDBLite consensus disorder prediction 109 128 - -
Gso17g1093 525 CDD SWIB_like 316 384 - -
Gso17g1093 525 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 84 525 - -
Gso17g1093 525 Gene3D SWIB/MDM2 domain 306 391 IPR036885 -
Gso17g1093 525 SMART swib_2 310 389 IPR019835 -
Gso17g1093 525 MobiDBLite consensus disorder prediction 1 143 - -
Gso17g1093 525 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 84 525 - -
Gso17g1093 525 SUPERFAMILY SWIB/MDM2 domain 305 394 IPR036885 -
Gso17g1093 525 MobiDBLite consensus disorder prediction 1 96 - -
Gso17g1093 525 Pfam SWIB/MDM2 domain 313 384 IPR003121 -
Gso17g1093 525 ProSiteProfiles SWIB/MDM2 domain profile. 309 386 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1093 Gso-Chr17 10398646 10401915 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gso17g1093 SWIB 5.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1093 K11650 - gmx:100817271 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0396 5 4191334 4194697 Gso17g1093 17 10398646 10401915 GST
Gso17g1093 17 10398646 10401915 Gso4g1648 4 46299690 46302559 PCT
Gso17g1093 17 10398646 10401915 Gso6g1442 6 14361865 14364760 PCT
Gso4g1648 4 46299690 46302559 Gso17g1093 17 10398646 10401915 PCT
Gso6g1442 6 14361865 14364760 Gso17g1093 17 10398646 10401915 PCT