Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g1272 ATGCTGATCTCTGATGAAGGAGATAGTGATGTGTTCTTTGACTCAGTGGATTGTTTCTCACCAACCCGAGATTCTGTTTTGACAGAACAAGAGTTTGGTTATGAGATTTGGGTGAATGAGCCTGTGAGTGTGATGGAAAGAAGGGAAAAGTTTTTGCAGGAGATGGGGTTGGGTGATGGATCTTCCAAGGTTTGTTCTCAAGAAAATAATGTGATGAGTTCTGATGATTCATCGGAGAGATTGGGACTAGAGAGGATCAGGGATAGTGGGGCAGTGTCAAATGCTTCTTGTAGTTGTATCTTGCCTGATGATGATCAAGTTTCTGAGCTGGTTCTCTCGGGCAGCGAGGCCACTTCTGAGGCACAAGGCTTGTTTGATGAACATAAGGGGTGCCCCAAAGATGAATCATGTTTTGAAGGGAAGGTTTATGAGGTTTCTTGTACAGATCAAGAGGTTAGACATAGAAAAGCCGAGGTTCGAGAAAAGTATATGGGGGAAAAGGAGAAGAAAAACTGGTGGAAGCACTTTATAAGCAGCAAGAAAGGAGGTGGGGGTAAAGTCAGATCAAAATTGAATTCATCGACAAATAAAACTCGAAGAATAAATGTTAGGCAGAATAAGAAGAGGTGGATGGAGCTCAGTGCACTGTATATTGGACAAGAGATTAGAGCTCACAAAGGCCTAATTTGGACTATGAAGTTTAGTCCCAATGGCCAATATCTAGCTAGTGGAGGTGAAGATGGTGTTATACGCATATGGCGTGTAAAAACACTCAATACATCTAGTATTTGCTTCAATGCAGAAGACAGTGCAGCTAACAAAGTGAAACATGACTTCTCTAGTTCTCAGAAGAAACACTCAAGCCAGTCCTTCGTCGTTCTTCCCAGTAAGATTTTCAAAATTGAGGAATCACCGTTGCATGAATTTTCTGGTCATGCCAGTGATGTCTTGGATTTGGCTTGGTCCAATTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGTAGTCAATGTCTAAGTGTTTTCCATCACAAAGACTATGTGACTTGTATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGTTCCATAGACGGCAAAGTCCGAATATGGGGGATACATGAAGAACGAGTTGTTGACTGGGCAGACATAAGAGATGTGATTAGTGCTATAAGTTACCGGCCAGATGGAAAAGGGTTTGTAGTCGGTTCCCTCCCAGGCACTTGCCGCTTTTATGTTGCCTCAGGCAAACATTTCCAGCTTGAGACTAAGATTCATGTCAATGGAAAGAAGAGTACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGAAGATTCCCGAGTTAGAATATTGGAAGGCACTGAATTTGTTCAGACATATAAAGGCCTTCCAAGATCCGGAAGTCAGATGTCTGGTTCATTTACCTCTGGTGGAGAACATATAGTTTCAGTTGGAGGGGACTCGCGTGTGTATATTTGGAACTTCAATGACTTGGGAAACGCTTCTTCCAAACAGACAAAATCCAAATATTCCTGTGAGCACTTCGGCTCTGAAGGGGTTACTGTTGCATTACCTTGGTCTTGCATGAGTGCAGAAGAACAAAGTGGCTCTTCCAATGATTTTGCCCACCATTCATCGTCACAACACCAACTAGAGGCATCTCATGGCGTTAGGGAGTCGGAACGATTTTCTTTCGGAAGTTGGTTCTCCATTGATGGCTCATGCCGCGGTTCGGTCACATGGCCTGAGGAGACGCTTCCCCGTTGGGATCTACCTCTTGTAGAAGTTGAATTTGATCACCAGAAGCTATGTACCAAAGATCCTTCCCATGAAAAACATGTATCAGAAACATGGGGACTATCCATTGTGGCAGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCCATTAGGCTTTAG 1998 0.4284 MLISDEGDSDVFFDSVDCFSPTRDSVLTEQEFGYEIWVNEPVSVMERREKFLQEMGLGDGSSKVCSQENNVMSSDDSSERLGLERIRDSGAVSNASCSCILPDDDQVSELVLSGSEATSEAQGLFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKAEVREKYMGEKEKKNWWKHFISSKKGGGGKVRSKLNSSTNKTRRINVRQNKKRWMELSALYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICFNAEDSAANKVKHDFSSSQKKHSSQSFVVLPSKIFKIEESPLHEFSGHASDVLDLAWSNSDTLLSSSSDKTVRLWKIGCSQCLSVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGKGFVVGSLPGTCRFYVASGKHFQLETKIHVNGKKSTSGNKITGIQFSQKNHQRVMITSEDSRVRILEGTEFVQTYKGLPRSGSQMSGSFTSGGEHIVSVGGDSRVYIWNFNDLGNASSKQTKSKYSCEHFGSEGVTVALPWSCMSAEEQSGSSNDFAHHSSSQHQLEASHGVRESERFSFGSWFSIDGSCRGSVTWPEETLPRWDLPLVEVEFDHQKLCTKDPSHEKHVSETWGLSIVAAGCDGTIKTFHNFGLPIRL* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g1272 665 SUPERFAMILY WD40 repeat-like 218 516 IPR036322 GO:0005515
Gso6g1272 665 SMART WD40_4 343 382 IPR001680 GO:0005515
Gso6g1272 665 SMART WD40_4 302 340 IPR001680 GO:0005515
Gso6g1272 665 SMART WD40_4 438 474 IPR001680 GO:0005515
Gso6g1272 665 SMART WD40_4 475 516 IPR001680 GO:0005515
Gso6g1272 665 SMART WD40_4 384 423 IPR001680 GO:0005515
Gso6g1272 665 SMART WD40_4 215 254 IPR001680 GO:0005515
Gso6g1272 665 Gene3D - 207 545 IPR015943 GO:0005515
Gso6g1272 665 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Gso6g1272 665 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Gso6g1272 665 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Gso6g1272 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 349 IPR001680 GO:0005515
Gso6g1272 665 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 665 - -
Gso6g1272 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 341 - -
Gso6g1272 665 Pfam WD domain, G-beta repeat 221 253 IPR001680 GO:0005515
Gso6g1272 665 Pfam WD domain, G-beta repeat 345 381 IPR001680 GO:0005515
Gso6g1272 665 Pfam WD domain, G-beta repeat 304 340 IPR001680 GO:0005515
Gso6g1272 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 257 - -
Gso6g1272 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 381 - -
Gso6g1272 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 391 IPR001680 GO:0005515
Gso6g1272 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 263 IPR001680 GO:0005515
Gso6g1272 665 SUPERFAMILY Nucleoporin domain 444 658 - -
Gso6g1272 665 PANTHER WD REPEAT DOMAIN 44 1 665 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g1272 Gso-Chr6 12408962 12418066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g1272 211 422 Miscellaneous Gene Families AT5G08390 21.659 4.40e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g1272 K20241 - gmx:100801576 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1804 4 48245868 48254556 Gso6g1272 6 12408962 12418066 GST
Gso5g1614 5 39459385 39465392 Gso6g1272 6 12408962 12418066 PCT
Gso8g1236 8 11347625 11353364 Gso6g1272 6 12408962 12418066 PCT
Gso6g1272 6 12408962 12418066 Gso5g1614 5 39459385 39465392 PCT
Gso6g1272 6 12408962 12418066 Gso8g1236 8 11347625 11353364 PCT