Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1614 ATGCTGAGCTCTGATGATGGAGACATGGATGTGTTCTTTGACTCAGTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGGTTCTGGAAGGTGTGGTTATGACGAAATTTGGGTGAAGGAGCCTGTTAGTGTGAAGGAGAGGAGGGAACGTTTTCTGCAGGGTTTGGGCTTAGCTGATTCTTCTTCCAAGGTTTGTTCACAAGAGAAAATGAGCTTAGATGACTCATCCATCAGCTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATCTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGAAGTTGATTCTCTCTGGAGGCAAAGCAGCTTCTAAAGAAAAAATCTCTTTGGATGAATTCAAAGGGTGTCCCCAAGATGAAGCAGAAGCAAACATTCAAGGAAAAGAGCATGAGTTCTCTTCTACAGCTGAGGAGCACAGACCCAGAGAAGCTGTTTCACAAGAAGAATTTCAGGATTTTGATATGAGTAAAAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAAGTGGTGAAGGAAATGTAAGGTCCAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAGTCTGGACCATGAAATTTAGTCCATGTGGTCAGTATTTAGCGAGTGGAGGCGAAGATGGTGTTGTTCGCATATGGTGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCCCAGAAGACAGTACTTCTAAAAGCAAAGTGGAATGTGACAACTCTTCTCCTCGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAGTGTTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAATGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGACAAGACTGTTCGCTTGTGGCAAATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACAATGACTATGCAGTGACATGCATTCAATTCAACCCTGTTGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGCCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTTGTTTTTATGTTGCTTCAGGAACATATTTCCAGCTTGAGGCTCAGATAGATGTCCATGGAAAGAAGAAAGCGTCCGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAACAGTCAGAGAATAATGATCACATCAGAAGATTCTAAAATTTGTGTATTCGATGGCATTGAGCTTGTTCAGAAATACAGAGGTCTTCCTAAGTCAGGATGTCAGATGTCTAGTTCATTCACATCAAGTGGAAAACATATAATCTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTTGATGACATGGGAAATGCTTCTTCAAAACAGACGAAATCCGAACGCTCCTGTGAGTACTTTTTCTCTAAAGGTGTTACTGTTGCAATTCCTTGGTCAGGCATGAAAGCAGATAAAAGGGACTCTAGTGGTAATTATTCCCACCATTCTTCAGAAATGCCAACCCAACAGCTAGAGGTTGCCTCTGAGGCTAGAGATCACAAACGTTTTTCTCTTGGTAATTGGTTCGCCATTGATGGCACGTGTCGAGGTTCTATGACTTGGCCCGAGGAGAAACTTCCTAGCTGGGATTTACCTATAACAGAAGATGAATATGGTCACCAGCAGTTATGTTACAAAGATAATTGCCATGGCAGAAATGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTTAGGCTTTAA 2031 0.4161 MLSSDDGDMDVFFDSVDSLSAQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGLGLADSSSKVCSQEKMSLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAASKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFDMSKRKRKNWWKRFVNIRKSGEGNVRSKLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLVWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHSSQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYAVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDGKGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSEDSKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQTKSERSCEYFFSKGVTVAIPWSGMKADKRDSSGNYSHHSSEMPTQQLEVASEARDHKRFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPITEDEYGHQQLCYKDNCHGRNVSETWGLSIVAAGCDGTIKTFHNFGLPVRL* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1614 676 SUPERFAMILY WD40 repeat-like 224 665 IPR036322 GO:0005515
Gso5g1614 676 Pfam WD domain, G-beta repeat 313 348 IPR001680 GO:0005515
Gso5g1614 676 Pfam WD domain, G-beta repeat 354 391 IPR001680 GO:0005515
Gso5g1614 676 Pfam WD domain, G-beta repeat 229 261 IPR001680 GO:0005515
Gso5g1614 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 401 IPR001680 GO:0005515
Gso5g1614 676 PANTHER WD REPEAT DOMAIN 44 1 676 IPR040324 -
Gso5g1614 676 SMART WD40_4 394 433 IPR001680 GO:0005515
Gso5g1614 676 SMART WD40_4 444 484 IPR001680 GO:0005515
Gso5g1614 676 SMART WD40_4 485 526 IPR001680 GO:0005515
Gso5g1614 676 SMART WD40_4 223 262 IPR001680 GO:0005515
Gso5g1614 676 SMART WD40_4 311 349 IPR001680 GO:0005515
Gso5g1614 676 SMART WD40_4 352 392 IPR001680 GO:0005515
Gso5g1614 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 394 - -
Gso5g1614 676 Gene3D - 401 548 IPR015943 GO:0005515
Gso5g1614 676 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Gso5g1614 676 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Gso5g1614 676 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Gso5g1614 676 Gene3D - 131 400 IPR015943 GO:0005515
Gso5g1614 676 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 676 - -
Gso5g1614 676 MobiDBLite consensus disorder prediction 148 168 - -
Gso5g1614 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 358 IPR001680 GO:0005515
Gso5g1614 676 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 261 IPR001680 GO:0005515
Gso5g1614 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 261 - -
Gso5g1614 676 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
Gso5g1614 676 MobiDBLite consensus disorder prediction 276 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1614 Gso-Chr5 39459385 39465392 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1614 K20241 - gmx:100819135 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1614 5 39459385 39465392 Gso8g1236 8 11347625 11353364 GST
Gso5g1614 5 39459385 39465392 Gso4g1804 4 48245868 48254556 PCT
Gso5g1614 5 39459385 39465392 Gso6g1272 6 12408962 12418066 PCT
Gso4g1804 4 48245868 48254556 Gso5g1614 5 39459385 39465392 PCT
Gso6g1272 6 12408962 12418066 Gso5g1614 5 39459385 39465392 PCT