Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g1804 ATGCTGATCTCTGATGAAGGAGATAGTGATTTGTTCTTTGACTCAGTGGATTGTTTCTCACCAACCCGAGAGTCTCTTTTGACAAAACAAGAGTTTGGCTATGAGATTTGGGTGAATGAGCCTGTGAGTGTGATGGAAAGAAGGGAAAAGTTTTTGCAGGGGTTGGGATTGGGTGATGGATCATCTTCCAAGGTTTGTTCTCAAGAGAATAATATGATGAGTTCTGATGATTCATCAGTGAGATTGGGACTAGAGAGGATCAGGGATAGTGGGGCAGCTTCAAATGCTTGTAGTTGTATTTTGCCTGATGATCAAGTTTCTGAGTTGGTTCTCTCGGGCAGCGAAGCCACTTCTGAGGCACAAGCCTTGTTTGATGAACATAAGGGATGCCCCAAAGATGAATCATGTTTTGAAGGGAAGGTTTATGAGGTTTCTTGTACAGATCAAGAGGTTAGACATAGAAAAGTCGAGGTTCCAGAAAAGTGTCTTGGTTTTGATATGGGTGAAAAGGAGAAGAAAAACTGGTGGAAGCACTTTATAAGCAGCAAGAAAGGAGGTGGAGGTAAATTCAGATCAAAATTGAATTCAACGACAAATAAAACTCGAAGAATAAATGTAAGGCAGAATAAGAAGAGGTGGATGGAGTTCAGTGCACTGTATATTGGACAAGAGATTAGAGCTCACGAAGGCCTAATTTGGACTATGAAATTTAGTCCCAATGGCCAATATCTAGCTAGTGGAGGAGAAGATGGTGTCATACGCATATGGCGTGTAAAAACACTGAATACATCTAGTATTTGCTTGAATGCAGAAGACAGTGCAGCTAGCAAAGTGAAACATGACTTCTCTAGTTCTCAGAAGAAACACTCAAGCCAATCATCCTTCATCGTTCTTCCAAATAAGATTTTCAAAATCGAGGAATCACCGTTGCATGAATTTTATGGTCATGCAAGTGATGTCTTGGATTTGGCTTGGTCCAGTTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGTAGTCAATGTCTAAGTGTTTTCTATCACAAAGACTATGTGACTTGTATTCAATTCAATCCCGTTGATGAAAATTACTTCATCAGTGGTTCCATAGATGGCAAAGTTCGAATATGGGGGATACATGAAGAACGAGTTGTTGACTGGGCAGACATAAGAGATGTGATAAGTGCTATAAGTTACCGACCAGATGCAAAAGGGTTTGTAGTCGGTTCCCTCACAGGCACTTGCCGTTTTTATGTTGCCTCAGGCAAATATTTCCAGCTTGAGACGAAGATTCGTGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGACGATTCCAAAGTTAGAATATTGGAAGGCATTGAACTTGTTCAGACATATAAAGGCCTTTCAAGATCCGGAAGCCAGATGTCTGGTTCATTTACCTCTGGTGGAGAACATATAATTTCAGTTGGAGGGGACTCTCGGGTGTATATTTGGAACTTCAATGACTCGGGAAATGCCTCTTCCAAACAGACAAAATCCAATTATTCCTGTGAGCACTTTGGCTCTGAGGGGGTTACTATTGCAATACCTTGGTCTGGCATGAGTGCAGAAGAACGAAGTGGCTCTTCCAATGATTTTACCCACTATTCTTCACAACACCAACTAGAGGCCTCTCATGGTGTTAGGGAGTCGGAACGATTTTCTTTCGGAAGTTGGTTCTCGATTGATGGTTCATGCCGCGGTTCAGTCACATGGCCCGAGGAGAAGCTTCCAAGTTGGGATCTACCTCTTGTAGAAGTTGAATTTGATCACCAGAAGCTATGTACCAAAGATCCTTCCCATGAAAAACATGTATCAGAAACATGGGGACTATCCATTGTGGCAGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCCATTAGGCTTTAG 2007 0.4165 MLISDEGDSDLFFDSVDCFSPTRESLLTKQEFGYEIWVNEPVSVMERREKFLQGLGLGDGSSSKVCSQENNMMSSDDSSVRLGLERIRDSGAASNACSCILPDDQVSELVLSGSEATSEAQALFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKVEVPEKCLGFDMGEKEKKNWWKHFISSKKGGGGKFRSKLNSTTNKTRRINVRQNKKRWMEFSALYIGQEIRAHEGLIWTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICLNAEDSAASKVKHDFSSSQKKHSSQSSFIVLPNKIFKIEESPLHEFYGHASDVLDLAWSSSDTLLSSSSDKTVRLWKIGCSQCLSVFYHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDAKGFVVGSLTGTCRFYVASGKYFQLETKIRVNGKKRTSGNKITGIQFSQKNHQRVMITSDDSKVRILEGIELVQTYKGLSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDSGNASSKQTKSNYSCEHFGSEGVTIAIPWSGMSAEERSGSSNDFTHYSSQHQLEASHGVRESERFSFGSWFSIDGSCRGSVTWPEEKLPSWDLPLVEVEFDHQKLCTKDPSHEKHVSETWGLSIVAAGCDGTIKTFHNFGLPIRL* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g1804 668 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 668 - -
Gso4g1804 668 Pfam WD domain, G-beta repeat 308 344 IPR001680 GO:0005515
Gso4g1804 668 Pfam WD domain, G-beta repeat 224 256 IPR001680 GO:0005515
Gso4g1804 668 Pfam WD domain, G-beta repeat 349 385 IPR001680 GO:0005515
Gso4g1804 668 Gene3D - 351 564 IPR015943 GO:0005515
Gso4g1804 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 385 - -
Gso4g1804 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 260 - -
Gso4g1804 668 SUPERFAMILY WD40 repeat-like 221 657 IPR036322 GO:0005515
Gso4g1804 668 SMART WD40_4 479 520 IPR001680 GO:0005515
Gso4g1804 668 SMART WD40_4 347 386 IPR001680 GO:0005515
Gso4g1804 668 SMART WD40_4 388 427 IPR001680 GO:0005515
Gso4g1804 668 SMART WD40_4 218 257 IPR001680 GO:0005515
Gso4g1804 668 SMART WD40_4 306 344 IPR001680 GO:0005515
Gso4g1804 668 SMART WD40_4 442 478 IPR001680 GO:0005515
Gso4g1804 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Gso4g1804 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Gso4g1804 668 Gene3D - 177 350 IPR015943 GO:0005515
Gso4g1804 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 395 IPR001680 GO:0005515
Gso4g1804 668 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Gso4g1804 668 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Gso4g1804 668 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Gso4g1804 668 PANTHER WD REPEAT DOMAIN 44 1 668 IPR040324 -
Gso4g1804 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g1804 Gso-Chr4 48245868 48254556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g1804 214 426 Miscellaneous Gene Families AT5G08390 22.477 2.45e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g1804 K20241 - gmx:100780979 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g1804 4 48245868 48254556 Gso6g1272 6 12408962 12418066 GST
Gso5g1614 5 39459385 39465392 Gso4g1804 4 48245868 48254556 PCT
Gso8g1236 8 11347625 11353364 Gso4g1804 4 48245868 48254556 PCT
Gso4g1804 4 48245868 48254556 Gso5g1614 5 39459385 39465392 PCT
Gso4g1804 4 48245868 48254556 Gso8g1236 8 11347625 11353364 PCT