Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0981 ATGCCAGCTTCTCCTTCAGAGAACCGAACCAGATGGAGGAAGCGAAAGAGAGATTCGCAAATCAGCCGGCGCCACCAGAAGCACGAGGAGGAGGAGGAGGACGACGAAGAAAACCCCAATGCGGCGGAGGAAGACCACGCCGAACGCGACTACGATTCGGAGGATCAGACGCACCACAACCACCCTAATTCGCAACCGCACGTGGAGGCTGAGGTTCTCTCTGACCACGGCGTTCAGATTTCGCAGTTCCCCGCGGTGATTAAGCGCTCCGTGAACCGCCCTCACTCCTCCGTCACCGCAATTGTTGCTCTGGAGCGAGCCCTCGAGTCCGGAGACAACAAGGCACAAAGCGCCCTCGATGCTCCGATTCTCGAGAACGTGTCTCACGGCCAGCTTCAAGCGCTATCGTCTGTTCCCTCTGATAACTTCGCTCTCGACTGTGATTCCTCTTTCGTCATCACTCCCCCTCCCATTTTGGAAGGTCGTGGCGTTGTTAAGCGCTTTGGAACTAAGGTTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCGCCTGCCACGGTGCACAGGTTGGAGAGGCAAGTGGTGCCACATTTCTTTTCAGGGAAATCGCCGGATCATACTCCGGAGAAGTACATGGAATGTAGGAACTGCATTGTTGCTTTGCACATGGAGGACCCTGGGATGAGGATTACGGTTTCTGATTGTCAGGGTTTGTTGGCTGGGGTTAATGTTGAAGATTTGACTCGGATTGTTAGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCGGATACCAAGTCATGAGTCTCCCAATGCTGTGTCTTGCCTGAGGGATGAGCCGAGTGGAGAGGTCCGTGTGCCGTCGGAGGCTTTGAAATCCATAGACAGTTTGATCAAATTTGACAAGCCCAACTGTAAGCTGAAAGCAGACGAAATTTATTCGTCATTGACTGCACATAGTGCCGATGTCTTAGATCTGGAGGATAGAATAAGAGAGCATCTATCGGAGAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGTTGTATACTATCAGTCTCAAAAGGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGACGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTGTAAGGGTGGATTCGACAAGGGATTATGGTGAACTAGATGGGGATAATTGGACTGATCAAGAAACTTTGCTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATAGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTAGAAAATATTAACGTTCCAAGTTTGTCTTTGTCATCCAATGCAATAAATAGAGATGATAGTGGAAGACTGCATTGCTACTCAAATGGAGTTACTGCAGGACCTGTCTATCAAACCAGAGATTCTGACCACCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCCCATGCAGCGTTAGCAGTATTGTCAGAGGATAATTCTGGCAGCACGTCACAGTTGGAAGCACCAGGACATGATAATAGGACAAATTCAGAAAGCATACATTGTCGAGATGGTGGCCCTCATCAAGAAACAGCAGTTTCAAATCATAATGAGGATAAGGCAAAGGTACATGGTTCATGGGGTATATATGAGGGTAGGACAACCCCACTCTCTGCTGAGAAAGTTAAAGATGCGGCTAAAGCTGGCCTTTCTGCTGCAGCCATGAAAGCAAAATTATTTTCCGATCACGAAGAACGAGAAATTCAGAGGTTATGTGCTAATATAGTTAATCATCAGCTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAATGTGAACAACTGGAGAGAACAAAACAAAGGATAGCTGCTGATCGGTCCCGCATGATGTCAGCACGTCTTGGAACTGTGGGAGCCACACCCACAATGAATGCATCGGGTGTTGGTACTTCAATGGCTAGTAATGGCAACAATAGGCAACAAATAATCTCTGCTTCTTCCTCACAACCCAGCATTTCAGGCTATGGCAACAACCAACCAGTTCATCCACATATGTCCTTTGCCCCACGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAACAATCACAATCAGCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGCCTGTATCGGGAACTAACTCTGGTTTAGGTTAA 2358 0.4618 MPASPSENRTRWRKRKRDSQISRRHQKHEEEEEDDEENPNAAEEDHAERDYDSEDQTHHNHPNSQPHVEAEVLSDHGVQISQFPAVIKRSVNRPHSSVTAIVALERALESGDNKAQSALDAPILENVSHGQLQALSSVPSDNFALDCDSSFVITPPPILEGRGVVKRFGTKVLVVPMHSDWFSPATVHRLERQVVPHFFSGKSPDHTPEKYMECRNCIVALHMEDPGMRITVSDCQGLLAGVNVEDLTRIVRFLDHWGIINYCVRIPSHESPNAVSCLRDEPSGEVRVPSEALKSIDSLIKFDKPNCKLKADEIYSSLTAHSADVLDLEDRIREHLSENHCNYCSCPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGELDGDNWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSLSLSSNAINRDDSGRLHCYSNGVTAGPVYQTRDSDHRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSEDNSGSTSQLEAPGHDNRTNSESIHCRDGGPHQETAVSNHNEDKAKVHGSWGIYEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFSDHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRIAADRSRMMSARLGTVGATPTMNASGVGTSMASNGNNRQQIISASSSQPSISGYGNNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSASSTAMFNAPSNVQPTTNHPLLRPVSGTNSGLG* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0981 785 MobiDBLite consensus disorder prediction 531 572 - -
Gso6g0981 785 Pfam SWIRM-associated region 1 601 676 IPR032451 -
Gso6g0981 785 SMART sant 395 443 IPR001005 -
Gso6g0981 785 MobiDBLite consensus disorder prediction 42 65 - -
Gso6g0981 785 SUPERFAMILY Homeodomain-like 172 267 IPR009057 -
Gso6g0981 785 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 61 784 - -
Gso6g0981 785 Gene3D - 395 445 - -
Gso6g0981 785 MobiDBLite consensus disorder prediction 531 546 - -
Gso6g0981 785 ProSiteProfiles SWIRM domain profile. 173 271 IPR007526 GO:0005515
Gso6g0981 785 ProSiteProfiles Myb-like domain profile. 391 441 IPR001005 -
Gso6g0981 785 MobiDBLite consensus disorder prediction 748 785 - -
Gso6g0981 785 Pfam Myb-like DNA-binding domain 398 440 IPR001005 -
Gso6g0981 785 SUPERFAMILY Homeodomain-like 396 449 IPR009057 -
Gso6g0981 785 ProSiteProfiles Zinc finger ZZ-type profile. 336 390 IPR000433 GO:0008270
Gso6g0981 785 Gene3D - 179 266 IPR036388 -
Gso6g0981 785 Pfam SWIRM domain 176 262 IPR007526 GO:0005515
Gso6g0981 785 PANTHER SWI/SNF COMPLEX-RELATED 61 784 - -
Gso6g0981 785 MobiDBLite consensus disorder prediction 1 66 - -
Gso6g0981 785 ProSiteProfiles SANT domain profile. 394 445 IPR017884 -
Gso6g0981 785 CDD SANT 398 440 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0981 Gso-Chr6 9472073 9478383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0981 341 437 EF-hand Containing Proteins AT3G07740 33.962 3.00e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0981 K11649 - gmx:100790286 1536.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2065 4 51073772 51080967 Gso6g0981 6 9472073 9478383 GST
Gso14g1209 14 28436376 28442169 Gso6g0981 6 9472073 9478383 PCT
Gso13g0157 13 10150357 10156249 Gso6g0981 6 9472073 9478383 PCT
Gso6g0981 6 9472073 9478383 Gso14g1209 14 28436376 28442169 PCT
Gso6g0981 6 9472073 9478383 Gso13g0157 13 10150357 10156249 PCT