Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g2065 ATGCCAGCCTCTCCTTCAGAGAACCGAACCAGATGGAGGAAGCGCAAGAGAGATTCGCAAATCAGCCGGCGCCACCAGAAGCACGAGGAGGAGGACGACGACGACGACGAAAACCCCAATGCGGAGGAAGACCTCGCCGAACGCGACTACGATTCGGAGGACCAAACGCACCACAACCACCCTAATTCGCAACCTCACGTGGAGACGGAGGTCCTCTCCGACCACGGCGTTCAGATTTCGCAGTTCCCGGCGGTGATAAAGCGCTCCGTGAACCGCCCTCACTCCTCCGTCACCGCAATTGTTGCTCTGGAGCGTGCCCTCGAGTCCGGAGAGAACAAGGCTCCAAGCGCTCTCGCTGCTCCGGTTCTCGAAAACGTGTCTCACGGCCAGCTTCAAGCGCTGTCGTCTGTTCCCTCTGATAGCTTTGCTTTCGACGGTGATTCCTCTTTTGTCATCACTCCCCCTCCCATTTTGGAAGGTCGTGGCGTTGTTAAGCGCTATGGAACTAAGGCTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCGCCTGCCACGGTGCACAGGTTGGAGAGGCAAGTGGTGCCGCATTTCTTTTCAGGGAAGTCGCCGGATCATACTCCGGAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCCTTGCACATGGAGGACCCAGGGAAGAGGATTACGGTTTCTGATTGCAAGGGTTTGTTGGCTGGGGTTAATGTTGAAGATTTGACTCGGATTGTTAGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCAGATGCCGAGTCATGAGTCTCCCAATGCTGTGTCTTGCCTAAGGGAGGAGACGAGTGGAGAGGTCCGTGTACCATCGGAGGCTTTGAAATCTATAGACAGTTTGATCAAATTTGACAAGCCCAACTGTAAACTGAAAGCAGACGAAATTTATTCGTCGTTGTCTGCACATAGTGCCGATGTCTTAGATCTGGAGGACAGAATAAGAGAGCATCTATCAGAGAATCACTGCAATTATTGTTCTTGTCCTCTTCCTGTTGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTGTAAGGGTGGATTCGACTAGGGATTATGGTGAACTAGATGGGGATAGTTGGACTGATCAAGAAACTTTGCTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATTAACGTTCCAAGCATGTCTTTGTCATCCAATGCAATAAATAGAGATCATAGTGGAAGACTGCATTGTTACTCAAATGGAGATACTGCAGGAACTGTCCATCAAACCAGAGATTCTGACAATCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCTTCTGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGAGGATAATTCTGGCAGCACGTCACAAATGGAAGCACCGGGACATGATAATAGGACAAATTCAGAAAACATACATTGTCGAGATGGTGGCCCTCATGGAGAAACAGCAGTTTCAAATAATCATAATGAGGATAAGGCAAAGGTGCGTGGTTCATGGGGTCTGAATGAGGGTAGGATAACCCCACTCTCTGCTGAGAAAGTTAAAGATGCGGCTAAAGCAGGCCTTTCTGCTGCAGCAATGAAAGCAAAATTATTTGCCGATCATGAAGAACGTGAAATTCAGAGGTTATGTGCTAATATAGTTAATCATCAGCTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAATGCGAACAACTGGAGAGAACAAAGCAAAGGTGTGCTGCTGATCGGTCCCGCATAATGTCAGCACGTCTTGGAACTGTAGGAGCCACACCCACAATGAATGCATCGGGTGTTGGTCCCTCAATGGCTAGTAATGGCAACAATAGGCAACAGATGATCTCTGCTTCTTCTTCACAGCCCAGCGTCTCAGGGTATGGCAACAACCAACCAGTTCATCCACATATGTCCTTTGCCCCACGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAACAATCACAACCAGCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGTCTGTATCGGGAACTAACTCTGGTTTAGGTTAA 2358 0.4656 MPASPSENRTRWRKRKRDSQISRRHQKHEEEDDDDDENPNAEEDLAERDYDSEDQTHHNHPNSQPHVETEVLSDHGVQISQFPAVIKRSVNRPHSSVTAIVALERALESGENKAPSALAAPVLENVSHGQLQALSSVPSDSFAFDGDSSFVITPPPILEGRGVVKRYGTKALVVPMHSDWFSPATVHRLERQVVPHFFSGKSPDHTPEKYMECRNCIVALHMEDPGKRITVSDCKGLLAGVNVEDLTRIVRFLDHWGIINYCVQMPSHESPNAVSCLREETSGEVRVPSEALKSIDSLIKFDKPNCKLKADEIYSSLSAHSADVLDLEDRIREHLSENHCNYCSCPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGELDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSNAINRDHSGRLHCYSNGDTAGTVHQTRDSDNRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSEDNSGSTSQMEAPGHDNRTNSENIHCRDGGPHGETAVSNNHNEDKAKVRGSWGLNEGRITPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRCAADRSRIMSARLGTVGATPTMNASGVGPSMASNGNNRQQMISASSSQPSVSGYGNNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQPASSTAMFNAPSNVQPTTNHPLLRSVSGTNSGLG* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g2065 785 Pfam SWIRM domain 175 261 IPR007526 GO:0005515
Gso4g2065 785 Pfam Myb-like DNA-binding domain 397 439 IPR001005 -
Gso4g2065 785 Gene3D - 178 265 IPR036388 -
Gso4g2065 785 ProSiteProfiles SWIRM domain profile. 172 270 IPR007526 GO:0005515
Gso4g2065 785 MobiDBLite consensus disorder prediction 695 716 - -
Gso4g2065 785 Gene3D - 394 444 - -
Gso4g2065 785 CDD SANT 397 439 IPR001005 -
Gso4g2065 785 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 60 784 - -
Gso4g2065 785 SMART sant 394 442 IPR001005 -
Gso4g2065 785 SUPERFAMILY Homeodomain-like 171 265 IPR009057 -
Gso4g2065 785 ProSiteProfiles Myb-like domain profile. 390 440 IPR001005 -
Gso4g2065 785 Coils Coil 614 634 - -
Gso4g2065 785 MobiDBLite consensus disorder prediction 530 579 - -
Gso4g2065 785 MobiDBLite consensus disorder prediction 748 785 - -
Gso4g2065 785 ProSiteProfiles SANT domain profile. 393 444 IPR017884 -
Gso4g2065 785 MobiDBLite consensus disorder prediction 1 68 - -
Gso4g2065 785 MobiDBLite consensus disorder prediction 32 49 - -
Gso4g2065 785 MobiDBLite consensus disorder prediction 530 545 - -
Gso4g2065 785 Pfam SWIRM-associated region 1 601 676 IPR032451 -
Gso4g2065 785 SUPERFAMILY Homeodomain-like 395 448 IPR009057 -
Gso4g2065 785 PANTHER SWI/SNF COMPLEX-RELATED 60 784 - -
Gso4g2065 785 MobiDBLite consensus disorder prediction 50 64 - -
Gso4g2065 785 ProSiteProfiles Zinc finger ZZ-type profile. 335 389 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g2065 Gso-Chr4 51073772 51080967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g2065 340 436 EF-hand Containing Proteins AT3G07740 33.962 3.00e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g2065 K11649 - gmx:100780440 1547.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g2065 4 51073772 51080967 Gso4g2065 4 51073772 51080967 ECH
Gso4g2065 4 51073772 51080967 Gso6g0981 6 9472073 9478383 GST
Gso14g1209 14 28436376 28442169 Gso4g2065 4 51073772 51080967 PCT
Gso13g0157 13 10150357 10156249 Gso4g2065 4 51073772 51080967 PCT
Gso4g2065 4 51073772 51080967 Gso14g1209 14 28436376 28442169 PCT
Gso4g2065 4 51073772 51080967 Gso13g0157 13 10150357 10156249 PCT