Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0157 ATGTCACCTTCCCCTTCTTTTCCTTCAGAGAACAGAACAAAATGGAGGAAGAAGCGAAAGAGAGAATCCTACAAACGCAACCAGAAGCGTCACGGCGGCGACGAAGACGACTCCGACGACGACAACGAGCCCGACGACAACGACGACTCCGACGACCAATTCCGCAGCCCTAGCGCCCAATTCGCGGACCCGCAGCGCGTGGAGATCGAGGTCGTGTCGCCCGACGGGGTCCAGATTTCGCGGTTCCCGCCGGCGATCAGGCGCGCCGTGACCCGCCCCCATGCGGCGGTCACGGCAATCGCTGCGCTGGAGGCCGGCGGCGACAAATCGCAACACAGCAGCATTCCGGTTCTGGAGAATGTGTCGCACGGCCAGCTCCAGGCGCTGTCGGCGGTGTCCGCCGATTTCTTCGTCATTGCTCCGCCGTCCGTTTTGAAAGGCTCCGGCGTCGTTAAGCGGTTCGGGAGTAGGGTTCTTGTTGTTCCTATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGTCTTGAGAGACAAGCAGTGCCTCATTTCTTCTCAGGAAAGTCGCCAGATCATACGCCAGAGAAGTACATGGAGTGTAGGAACTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAGTCTCTAGTTGCCAGGGATTGTCAGTTGGTGTTGGTAATGAAGATTTAACTCGAATTGTTAGGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTCCGGGTCCAAGTCATGAGAATTCGGACAATGAGACTTACCTGAAGGAGGACACAAGTGGTGCAATATGTGTGCCATCAGCAGGTTTAAGATCCATTGATAGTTTGGTCAAATTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAATTTATTCATCTCGAACAATGCACAATACTGATATTTCTGATTTGGATGAAAGAATAAGAGAGCATCTATCTGAAAACTATTGCCATTATTGTTCTTGTTCTCTTCCTGTTGTGTACTACCAATCACAAAAGGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCACTGGTCATTCTAGTATAGATTTTATAAGGGTGGATTCAACTACAGATTTTGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTGCTGCTGCTTGAAGCAGTGGAGGTTTACAATGAGAATTGGAATGAAATTGCTGAGCATGTTGGCACCAAGTCGAAAGCACAATGCATTCTTCATTTTCTCCGTTTACCTGTAGAAGATGGAAAGTTGGAAAATATCAATGTTTCAAGTTTGTCTTTGTCATCCATTGTGAAGAATCAAGAGGATAATGGAAGATTGCATTGTTGCTCAAATGGGGATTCTGCAGGACCTGTACATAACAGCCAAGATTCTGATGGCAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTTGCTGCAACTTGTGCTCATGCAGCATTAGCTGCATTGTCAAGGAATAATTCCGGGAGCACGTCACATATAGAAGCACCGGATAATGATAATAGGACAAATTCAGAAAGCGTGCATAATAGAGATGGTGGCCATGATGGAGAGGTTGCAAATTCAAATCAGAAAAATGAGGACAAGTCAAAAGTACTTGGTTCATGTGGTCAAAATGAGGGAGGGTCAACCCTGCTATCTGCTGAGAAAATCAAAGATGCTGCCAAAGAAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCCAATATTGTTAATAATAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAGAGAATGTGAACAAGTTGAGAAGGTGAAGCAGAGGTTGGCTTCTGATCGGTCCCATATTGTATCAACACGTCTTGGAAATGGTGGAACCACTCCGCCAATGAATGTTGCAGGTGCTGGTCCATCCATGGTTAACAACAACAGCAATGGTAGGCAACAAATGATTTCTGCTTCTTCCTCACAACCTAGCATCTCAGGATATGGCAATAGCCAACCAGTTCATCCACATATGTCCTTCGTCCCACGGCCTTCAATGTTTGGGTTGGGGCAAAGGCTGCCACTTTCTATGATTCAACAACAACATTCAGCTTCTTCAGATCCGATGTTCAATGGCCCCGGTAATTTGCAGCCTACTCCCAATCATTCAGTGTCGAGGCCGGTGTGA 2298 0.4639 MSPSPSFPSENRTKWRKKRKRESYKRNQKRHGGDEDDSDDDNEPDDNDDSDDQFRSPSAQFADPQRVEIEVVSPDGVQISRFPPAIRRAVTRPHAAVTAIAALEAGGDKSQHSSIPVLENVSHGQLQALSAVSADFFVIAPPSVLKGSGVVKRFGSRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVSSCQGLSVGVGNEDLTRIVRFLDHWGIINYCAPGPSHENSDNETYLKEDTSGAICVPSAGLRSIDSLVKFDKPKCKFKADEIYSSRTMHNTDISDLDERIREHLSENYCHYCSCSLPVVYYQSQKEVDILLCTDCFHDGRFVTGHSSIDFIRVDSTTDFGDLDGDSWTDQETLLLLEAVEVYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSLSSIVKNQEDNGRLHCCSNGDSAGPVHNSQDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSRNNSGSTSHIEAPDNDNRTNSESVHNRDGGHDGEVANSNQKNEDKSKVLGSCGQNEGGSTLLSAEKIKDAAKEGLSAAAMKAKLFADHEEREIQRLCANIVNNKLKRLELKLKQFAEIETQLMRECEQVEKVKQRLASDRSHIVSTRLGNGGTTPPMNVAGAGPSMVNNNSNGRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQQHSASSDPMFNGPGNLQPTPNHSVSRPV* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0157 765 ProSiteProfiles Zinc finger ZZ-type profile. 322 376 IPR000433 GO:0008270
Gso13g0157 765 MobiDBLite consensus disorder prediction 1 67 - -
Gso13g0157 765 MobiDBLite consensus disorder prediction 517 569 - -
Gso13g0157 765 Pfam Myb-like DNA-binding domain 384 426 IPR001005 -
Gso13g0157 765 ProSiteProfiles Myb-like domain profile. 384 427 IPR001005 -
Gso13g0157 765 MobiDBLite consensus disorder prediction 464 479 - -
Gso13g0157 765 MobiDBLite consensus disorder prediction 735 765 - -
Gso13g0157 765 Gene3D - 165 251 IPR036388 -
Gso13g0157 765 MobiDBLite consensus disorder prediction 530 556 - -
Gso13g0157 765 MobiDBLite consensus disorder prediction 458 479 - -
Gso13g0157 765 Pfam SWIRM-associated region 1 589 661 IPR032451 -
Gso13g0157 765 Pfam SWIRM domain 162 248 IPR007526 GO:0005515
Gso13g0157 765 CDD SANT 384 426 IPR001005 -
Gso13g0157 765 ProSiteProfiles SANT domain profile. 380 431 IPR017884 -
Gso13g0157 765 Coils Coil 613 640 - -
Gso13g0157 765 SUPERFAMILY Homeodomain-like 382 435 IPR009057 -
Gso13g0157 765 ProSiteProfiles SWIRM domain profile. 159 257 IPR007526 GO:0005515
Gso13g0157 765 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 60 765 - -
Gso13g0157 765 Gene3D - 381 431 - -
Gso13g0157 765 PANTHER SWI/SNF COMPLEX-RELATED 60 765 - -
Gso13g0157 765 SMART sant 381 429 IPR001005 -
Gso13g0157 765 SUPERFAMILY Homeodomain-like 158 252 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0157 Gso-Chr13 10150357 10156249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g0157 327 423 EF-hand Containing Proteins AT3G07740 33.962 7.30e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0157 K11649 - gmx:732600 1482.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1209 14 28436376 28442169 Gso13g0157 13 10150357 10156249 GST
Gso13g0157 13 10150357 10156249 Gso4g2065 4 51073772 51080967 PCT
Gso13g0157 13 10150357 10156249 Gso6g0981 6 9472073 9478383 PCT
Gso4g2065 4 51073772 51080967 Gso13g0157 13 10150357 10156249 PCT
Gso6g0981 6 9472073 9478383 Gso13g0157 13 10150357 10156249 PCT