Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0874 ATGGACTCCCCCATGACGGCCAGAATGCTGAAAATGTCAGACGACAACAACAAACGAAACGCAGAAACGAGGTTCGTTGGGATTGCCAATGCGCCCACAACACCATCACCATTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATCTCCAGGGTCCCTCTCTCTCCTTCTCCACCACCACCACCACCACCACCTCCCTCTCCCAGATTCCGGTTGGACCCAGCAGACCCCATGTGGGCCCATGATTTCTCTCTCGCCAACGATTTCTCCAGAATCAACCTCTTCGATCATGCAACCCAAACCGATCATAACATGCCTTTCACACCCTACGCTTCTTATTTCAATGAAACAGGACCCCTCCCATATCATCGTCATCATGTTAACAACACCCAAACCAACATGGGTTTGGACCCTTACGCTTCTTGTTTCAATGAAACAGGAACCTTCCGAACCCTCCCCTATCATCCCCATGTTAACAATGCGGGTTTATTCGATAAAGGTTACACTTTTCCCATCCCAGATGATCACGTGTATCATCACCTCGTCGATCAGAGGAGGAGGCAGCCACAGGGTACAAGTGATAATAACTACCAGATTCTCGGTGATCGTTACGCGGTGGCTTCACAGTCTCTCGGAGGAGGAGGAGGAAGAGTCAAAAGCCCCATTAGGTTTTCTCAGATAACGCCTCCGTATCAATATCCTCCCAATGCCAATATTACCCCATCACATTATTACGTTGCTGCAAAAGAAAAAGCTGAACTTTCCCCTTTTTTATCTCCTAGGAGAATCATCGGGGAAGACCCTGCTGCAGCGTTTAGGTGTGACAACAATGGTGTTTTCCTACAAGGGAGAGATGCAAAACACTACTTTGAGAATGAGTATGGTTCTTACAGAAGGAGTCCTCGTTATGATGATGATGCAATTCATGGTGTGGGTCGGAGTGTTGTTCGTAAGAACTTTTATTCTTCTGCTGCTGCTCCTTCTGGTCAAAGAAGTGGTGGTGATTTCTCATCAGTGCCCATGCTGCAGGATTTTTATTCTGTGCCTGACGCGCAGTGCTACATTTACAACATGGCAAAGGATCAAAATGGTTGTCGTTTTCTGCAGCGGATGGTGGCTGAGGGGACCTACCAAGATATTTGTATGGTGTTTGAGGGAATCATTGGGAATGTTGTTGAACTCATGATAGACTCTTTCGGGAATTATCTGGTGCAGAAGCTGCTCGATGTTTGCACCGATGATCAACGGCTGCAGATTGTGCTCATGCTGACCAATCACCCAGCCCAGCTCGTTAGAGTCTCTTTAAATACTCACGGAACACGCGTGGTGCAGAAGTTGATCGAGACCCTCACCTCCACTGAACAAGTTTCATTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAACCATCTCATTCAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCAGCATGGATGTTTTGTATTGCAACGTTGCATTCACCACTCTGTAGGAAAGAATCGAGATAAGCTGGTCACAGAAATATGCAAACATGGACTTCTCCTGGCTCAGGATGCATTTGGAAATTATGTTGTTCAATATGTTATAGAGTCGGATACCGCAGCTGTCTCAGCCAAACTACTTAGTCAGTTCAAAGAGAACTTTGTAATGTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTCAGCATATTGGAGACAGCAGATCAAGGATAGTTCGAGAATTGTTGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGATCAATATGCCAATTATGTCATTCAATCTGCTCTACTTTTTACAAAGGGGCCTCTGCATGCATCTTTGGCTGAAGCTGTTCGTCTTCACAAAACGTTGTGCACCAGTCCATATTGCAAGAGGATTTTTTCAGGAAACCTGCTTAAGAAGTGA 2007 0.4569 MDSPMTARMLKMSDDNNKRNAETRFVGIANAPTTPSPFLHPDHVAVGSPISRVPLSPSPPPPPPPPPSPRFRLDPADPMWAHDFSLANDFSRINLFDHATQTDHNMPFTPYASYFNETGPLPYHRHHVNNTQTNMGLDPYASCFNETGTFRTLPYHPHVNNAGLFDKGYTFPIPDDHVYHHLVDQRRRQPQGTSDNNYQILGDRYAVASQSLGGGGGRVKSPIRFSQITPPYQYPPNANITPSHYYVAAKEKAELSPFLSPRRIIGEDPAAAFRCDNNGVFLQGRDAKHYFENEYGSYRRSPRYDDDAIHGVGRSVVRKNFYSSAAAPSGQRSGGDFSSVPMLQDFYSVPDAQCYIYNMAKDQNGCRFLQRMVAEGTYQDICMVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQRLQIVLMLTNHPAQLVRVSLNTHGTRVVQKLIETLTSTEQVSLVKSAIQPGFLDLIKDLNGNHLIQRCLQCLSCQDNQFIFDAAVKFCVEIATHQHGCFVLQRCIHHSVGKNRDKLVTEICKHGLLLAQDAFGNYVVQYVIESDTAAVSAKLLSQFKENFVMLSTQKFSSHVVEKCLQHIGDSRSRIVRELLSVPRFEQLLQDQYANYVIQSALLFTKGPLHASLAEAVRLHKTLCTSPYCKRIFSGNLLKK* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0874 668 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 322 668 IPR033133 GO:0003723
Gso6g0874 668 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 119 668 - -
Gso6g0874 668 SUPERFAMILY ARM repeat 353 661 IPR016024 -
Gso6g0874 668 CDD Pumilio 346 662 IPR033712 GO:0003723
Gso6g0874 668 SMART pum_5 423 461 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 535 570 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 387 422 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 351 386 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 608 643 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 571 605 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 463 498 IPR001313 GO:0003723
Gso6g0874 668 SMART pum_5 499 534 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 575 608 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 615 629 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 430 459 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 542 562 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 468 498 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 504 537 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 356 389 IPR001313 GO:0003723
Gso6g0874 668 Pfam Pumilio-family RNA binding repeat 391 421 IPR001313 GO:0003723
Gso6g0874 668 MobiDBLite consensus disorder prediction 1 73 - -
Gso6g0874 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 571 609 IPR001313 GO:0003723
Gso6g0874 668 MobiDBLite consensus disorder prediction 53 73 - -
Gso6g0874 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 499 534 IPR001313 GO:0003723
Gso6g0874 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 463 498 IPR001313 GO:0003723
Gso6g0874 668 Gene3D - 344 665 IPR011989 -
Gso6g0874 668 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 119 668 - -
Gso6g0874 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 535 570 IPR001313 GO:0003723
Gso6g0874 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 387 423 IPR001313 GO:0003723
Gso6g0874 668 ProSiteProfiles Pumilio RNA-binding repeat profile. 426 461 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0874 Gso-Chr6 8327184 8330488 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0874 - - gmx:100813309 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0884 4 9527267 9531268 Gso6g0874 6 8327184 8330488 GST
Gso14g1447 14 45045877 45051269 Gso6g0874 6 8327184 8330488 PCT
Gso13g0624 13 20243139 20248432 Gso6g0874 6 8327184 8330488 PCT
Gso6g0874 6 8327184 8330488 Gso14g1447 14 45045877 45051269 PCT
Gso6g0874 6 8327184 8330488 Gso13g0624 13 20243139 20248432 PCT