Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0884 ATGGATTCCCCCATGCTGAAGATGTCAGACGACAACAACAAACGAAACGCAGCAGAGGACGCAGAAACAAGGTTCGTTGGGATTCCCACAACACCATCACCATTCCTTCACCCTGACCATGTGGCCGTTGGGTCCCCCATCACCAGGGTCCCTCTCGCTCCTTCTCCCGCACCACCACCTCCCTCTCCCTGCAGATTCTGGTTGGACCCTGCATACCCCGTTTGGGGCCATGATTTCTCCAGAATCAACTTCTTCGATGCAACCCAAACCGATAACATGCCTTTCGAACCCTACGCTTCTTATTTCAATGAAACAGGAACCCTCCCATATGTTAACAACACCCAAACCAACATGGGTCTGGACCCTTACGCTTTTTGTTTCAACGAAACAGGAACCTTCCCATCCCTTCCCTATCATCAGCATGTCAACAATGTGCCTTTATTCGATAAAGGTTACACTCTTGGCACCCCAGATGATCACGCCAACCTCGTGTATCATCACCTCGTCGATCAGAGGAGGAGGCAGCTAGAGGGTACATCTGATAATAACTATCAGATTCTCCGTGATCGTTACATGGCGGCTTCACAGTCTCTCCACGATGGAGGAGGAGTCAAAAGTCCCATTAGGTTTTCTCAGATAACGCCTCAACATCAATATCCTCCCAATGCCAATATTACCCCATCACATTATTACGTTGCTGCAAAACAAAAAGCTGAACTTTCCCCTTTTCTATCTCCGAGGAGAATCGGGGGAGACCTTGCTACAGCGTTTAGGTATGACAACAATGGCGTTTTTCTACAAGGGAGAGATGCAAAACACTACTTTGAGAATGGGTACGGTTCTTACAGAAGGAGTCCTCGCGATGATGATGCTGCTGCAATTCATGGCGTGGGTGGGAGTGTTGTTCCTAAGAACTTTTATTCTGCTGCTGCTCCTTCTGTTCAAAGAAGTGGTGGTGGTGATTTCTCATCACTGCCCATGCTGCTGGATTTTTATTCTGTGCCTGATGCGCAGTGCTACATTTACAACCTGGCAAAGGATCAGAATGGTTGTCGTTTTCTGCAGCGGATGGTGGATGAGGGGACCTACCAGGATATATGTATCGTGTTTGAGGGAATCATTGGGAATGTTGTTGAACTCATGATAGACTCTTTCGGGAATTATCTTGTGCAGAAGCTGCTCGATGTTTGCACCGACGATCAACTCCTGCAGATTGTGCTCTTGTTGACCAATCACCCAACCCAGCTCGTTAGAATCTCTTTAAATACTCACGGCACACGCGTGGTGCAGAAGTTGATCGAGACCCTCACCTCCGATGAACAAGTTTCACTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATTTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCTTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCGGCATGGATGTTGTGTATTGCAATGTTGCATTCATCACTCAACAGGAAAGAATCGGGATAAGCTGGTCACAGAAATATGCAAAAATGGACTTCTCCTCGCTCAGGATGCATTTGGAAATTATGTTGTTCAGTATGTTATAGAATCGGATACCCCAGCTGTCTCAGTCAAACTGCTTAGCCAGTTCAAAGGAAGCTTTGTAATTTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTAAGCATATCGGAAACAGCAGGCCAAGGATAGTTGGAGAGTTGACGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCGATCTGCTTTACTTTTTACAAAGGGCCCTCTGCATGCATCTTTGGCTGAAATCGTTCGTGCTCACAAAGGGTTGCGCACCAGTCCATATTGCAAGAGGATTTTCTCGGGAAGCTTGCTCAAAAAGTGA 1962 0.4602 MDSPMLKMSDDNNKRNAAEDAETRFVGIPTTPSPFLHPDHVAVGSPITRVPLAPSPAPPPPSPCRFWLDPAYPVWGHDFSRINFFDATQTDNMPFEPYASYFNETGTLPYVNNTQTNMGLDPYAFCFNETGTFPSLPYHQHVNNVPLFDKGYTLGTPDDHANLVYHHLVDQRRRQLEGTSDNNYQILRDRYMAASQSLHDGGGVKSPIRFSQITPQHQYPPNANITPSHYYVAAKQKAELSPFLSPRRIGGDLATAFRYDNNGVFLQGRDAKHYFENGYGSYRRSPRDDDAAAIHGVGGSVVPKNFYSAAAPSVQRSGGGDFSSLPMLLDFYSVPDAQCYIYNLAKDQNGCRFLQRMVDEGTYQDICIVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQLLQIVLLLTNHPTQLVRISLNTHGTRVVQKLIETLTSDEQVSLVKSAIQPGFLDLIKDLNGNHVIQRCLQCFSCQDNQFIFDAAVKFCVEIATHRHGCCVLQCCIHHSTGKNRDKLVTEICKNGLLLAQDAFGNYVVQYVIESDTPAVSVKLLSQFKGSFVILSTQKFSSHVVEKCLKHIGNSRPRIVGELTSVPRFEQLLQDPYANYVIRSALLFTKGPLHASLAEIVRAHKGLRTSPYCKRIFSGSLLKK* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0884 653 CDD Pumilio 331 647 IPR033712 GO:0003723
Gso4g0884 653 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 309 653 IPR033133 GO:0003723
Gso4g0884 653 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 653 - -
Gso4g0884 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 372 407 IPR001313 GO:0003723
Gso4g0884 653 SUPERFAMILY ARM repeat 338 646 IPR016024 -
Gso4g0884 653 MobiDBLite consensus disorder prediction 1 33 - -
Gso4g0884 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 520 555 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 408 446 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 520 555 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 593 628 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 448 483 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 372 407 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 336 371 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 556 590 IPR001313 GO:0003723
Gso4g0884 653 SMART pum_5 484 519 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 415 444 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 341 373 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 561 581 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 453 483 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 489 522 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 528 550 IPR001313 GO:0003723
Gso4g0884 653 Pfam Pumilio-family RNA binding repeat 376 406 IPR001313 GO:0003723
Gso4g0884 653 Gene3D - 330 650 IPR011989 -
Gso4g0884 653 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 109 653 - -
Gso4g0884 653 MobiDBLite consensus disorder prediction 7 21 - -
Gso4g0884 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 448 483 IPR001313 GO:0003723
Gso4g0884 653 ProSiteProfiles Pumilio RNA-binding repeat profile. 408 446 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0884 Gso-Chr4 9527267 9531268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0884 - - gmx:100784921 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0884 4 9527267 9531268 Gso4g0884 4 9527267 9531268 ECH
Gso4g0884 4 9527267 9531268 Gso6g0874 6 8327184 8330488 GST
Gso14g1447 14 45045877 45051269 Gso4g0884 4 9527267 9531268 PCT
Gso13g0624 13 20243139 20248432 Gso4g0884 4 9527267 9531268 PCT
Gso4g0884 4 9527267 9531268 Gso14g1447 14 45045877 45051269 PCT
Gso4g0884 4 9527267 9531268 Gso13g0624 13 20243139 20248432 PCT