Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g0624 ATGAGAAACGAAGAGCTAGGAGGAATGTGGTTGAACCGGTTTTCCAATCTTAATACACTCAACAACACCCCCCTTCACCGTGGCCACGTCACCTCACAACCACAATCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATTGTGTTGATGTTGATGTGACGCTGTCTAATGATTTTGCTAGAATGAGTGTTTTTAACAAACTAGGGAATGTTGGTGTCAAAGCCAGAGGAAATGGTTATGGATATGGTGCTAATGTTATGGACTCATCATACCCACATGCATTCTCACACTCACTTTGTTCTTTTGATGCACATGTTCATGAAGAAACGGGTACCCCATTACCTATTTGGGGTGTTTCAGTTTCTTCTGATTTGAAGGGACACACTTTTGGACCCCCAATGGAGTTTTCTTCTCATACCCAAAGGAGTAACCCTTGTTATGGACAGGTTCCACTTCAGAACCCTTTTCATGCTACAAGGCCTTTTGCAATGGACTGTGATGTGAAAAGTCCCTTTCTGATGCAACAACAACCCAAGGTTGCTATGAATGTTAACACTCCATCTTCACATTACTTCCCTGCAGCAAAAGAAAGAGGAACGACAAGGGTAGCTGTAAACCCCAATGGTGGTGATTTTTCTCATTCTAGAGAGGACCCTTTGGGGTTTCAATGTGATGGTGGTTTTATCTTGCAAGAGAAGGATGTGAAATGTTGTAATGGTTGTAGAGGCTGCAATTCTTTGTGGGGTTGCAATGAGAGTTTATCCTTACCAGTTCAAGAAGTGGGAGTGGGTGAGGAACTTCCTCAGCACATTCCTTCTCGTGTTGCTCCCACTAAGCACGAAAAGAATGGTGTTCTCACGAGCGACGTTTCACCTTCTTCGCAGCCGTTGTTGTACAATTTTAGTCCTTTGGCTAAGTTCCAAGGCTACATTTATTACCTGGCTAAGGATCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCCGAAGATGTGCTAGTATTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGATTGACCCTTTTGGGAACTACCTCGTGCAAAAGCTGCTTGATGTGTGTGGAGAAGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTGAAGAACCAGGGCAGCTAGTCAAAACCTCTTTGAATCTACACGGGACTCGGGTGGTGCAGAAGTTGATCACCACTGTGGACTCTAGAAAACAAATTGCAATGCTGAGGTCTGCCATTCAATCTGGTTTTCTTGCCCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTTATGCTGCTACAAAGTTTTGTGTGGAAATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTATTCCACCGGAAAATACAAAGATATGCTGGTAAAGGAAATATGCAGACATGGGCATCTCCTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGAACCCAAGTGCCTCATTGAAACTGCATTCTCAGTTCAAAGGGAACTACGCCAACCTCTCAATGCAAAAATTTAGCAGTCATGTAGTTGAAAAATGCCTCGTGCATATTGTAGAGATCAGGTCAAGGATAGTCCAAGAATTGTCGTCTTTTCCTCACCTTGAGCGGTTGCTACAAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGCTCTCTGCATGCATCTCTAGCCGAAGCTGTTCGCCCCTACAAAACATTGCGCAGCAGCCCTTATTGCAAAAGGATTTTCTCGAGGAACCTGCTTAACAAGTGA 1872 0.4322 MRNEELGGMWLNRFSNLNTLNNTPLHRGHVTSQPQSSSSVFSMIHDDCVDVDVTLSNDFARMSVFNKLGNVGVKARGNGYGYGANVMDSSYPHAFSHSLCSFDAHVHEETGTPLPIWGVSVSSDLKGHTFGPPMEFSSHTQRSNPCYGQVPLQNPFHATRPFAMDCDVKSPFLMQQQPKVAMNVNTPSSHYFPAAKERGTTRVAVNPNGGDFSHSREDPLGFQCDGGFILQEKDVKCCNGCRGCNSLWGCNESLSLPVQEVGVGEELPQHIPSRVAPTKHEKNGVLTSDVSPSSQPLLYNFSPLAKFQGYIYYLAKDQNGCRFLQRMIDEGTSEDVLVLFNGVIDDVVELMIDPFGNYLVQKLLDVCGEDERLQVVSMLTEEPGQLVKTSLNLHGTRVVQKLITTVDSRKQIAMLRSAIQSGFLALIKDLNGNHVIQRCLQYFSCKDNEFIFYAATKFCVEIATHQHGCCVLQRCIDYSTGKYKDMLVKEICRHGHLLAQDPFGNYVVQYIIEMENPSASLKLHSQFKGNYANLSMQKFSSHVVEKCLVHIVEIRSRIVQELSSFPHLERLLQDPYANYVVQRALGVTKGSLHASLAEAVRPYKTLRSSPYCKRIFSRNLLNK* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 306 341 IPR001313 GO:0003723
Gso13g0624 623 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 6 623 - -
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 490 525 IPR001313 GO:0003723
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 378 416 IPR001313 GO:0003723
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 418 453 IPR001313 GO:0003723
Gso13g0624 623 CDD Pumilio 309 618 IPR033712 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 311 341 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 498 514 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 530 562 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 423 452 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 347 379 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 386 415 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 459 492 IPR001313 GO:0003723
Gso13g0624 623 Pfam Pumilio-family RNA binding repeat 573 585 IPR001313 GO:0003723
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 561 598 IPR001313 GO:0003723
Gso13g0624 623 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 281 623 IPR033133 GO:0003723
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 454 489 IPR001313 GO:0003723
Gso13g0624 623 SUPERFAMILY ARM repeat 304 617 IPR016024 -
Gso13g0624 623 ProSiteProfiles Pumilio RNA-binding repeat profile. 342 377 IPR001313 GO:0003723
Gso13g0624 623 Gene3D - 297 621 IPR011989 -
Gso13g0624 623 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 6 623 - -
Gso13g0624 623 SMART pum_5 342 377 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 490 524 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 418 453 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 381 416 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 526 560 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 454 489 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 306 341 IPR001313 GO:0003723
Gso13g0624 623 SMART pum_5 563 598 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g0624 Gso-Chr13 20243139 20248432 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g0624 - - gmx:100790283 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1447 14 45045877 45051269 Gso13g0624 13 20243139 20248432 GST
Gso13g0624 13 20243139 20248432 Gso4g0884 4 9527267 9531268 PCT
Gso13g0624 13 20243139 20248432 Gso6g0874 6 8327184 8330488 PCT
Gso4g0884 4 9527267 9531268 Gso13g0624 13 20243139 20248432 PCT
Gso6g0874 6 8327184 8330488 Gso13g0624 13 20243139 20248432 PCT