Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g1447 ATGAGAAATGAAGAACTAGGAACTTGGTTGAACGGGTTTTCTAACAACAACAGCATCCTTCACCGTGGCCACGTCACCTCACCACCACAACCTCAACCTTCTTCGAGTGTTTTCTCCATGATCCATGATGATGGTGTTGATATTGATGCGATGCTGTGTAGTGATTTTGCTAGAATGAGTGTTTTTCACGAACTAGGGAATGTTGGTGCCAAAACCAGAGGATATGGTGCTAATGTTATGGATTCATCATACCCACATGCATTCTTAAACTCACACTCACCTTGTTCTTTTGATGCACATGCACATGTTCATGAAGAAATGGGTACCCCATTACCTACTTGGGGTGTTTCAGTTCCTTCTGATGTGAAGGGACACACTTTTGGACCCCCAATGGAGTCTTCTTCTCATACCCAAAGGAGCAACACTTGCTATGGGCACGTTCCACTGCAAAACCCATTTCATGCTACAAGGCCTTTTGTAGTGGATTGTGATGTGAAAAAACCCATTGTGTTCTCTCAAAGTCAAACCATGATGCAACCAAAGATTGCTATGAATGTAAACACGCCATCATCACATTGTTTCCCTGCAGCAAAAGAAAGAGGAACAACAAGTGTAGCTGTAACCACCAATGGTGATTTTTCTCACTCTAGAGGGAACCCTTTGGGGTTTCAATTTGACGGTGGTTTTGTCCTACAAGAGAAGAATGTAAAATGCTATGCTGGTAGAGGGTGTCATTCTTTGTGGGGTTGCAAAGAGAGTTTACCTTTACTAGTTCAACAAGCAGTGGGAGAGGAACTTCCTCAACTCATTCCTCCTCGTGTTGCTCCCACTAGACATGAAAAGAATGGCATTCTCGCCAGCGATGTTTCGCTTTCTCTGCGGCCATTGTTGTACAATTTTAGTCCTTTGTCTAAGTTCCATGGCTACATTTACTACCTGGCTAAGCACCAGAACGGTTGCCGCTTCCTGCAGAGGATGATTGATGAGGGCACCTCTGAACATGTGCTAATAGTGTTCAATGGAGTCATAGATGATGTTGTTGAGCTTATGGTGGACCCTTTTGGCAACTACCTTGTGCAGAAGTTGCTTGATGTGGGCGGAGATGATGAAAGGTTGCAGGTTGTGTCAATGTTGACTAAAGAACCAGGGCAGCTAATCAAAACCTCTTTGAATATACACGGGACTCGGGTGGTTCAGAAGCTGATCACGACTGTCGACTCTAGAAAACAAATTGCAATGCTTATGTCTGCTATTCAATCTGGTTTTCTTGCTCTTATTAAGGATCTAAATGGGAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTTATGCTGCTACAAAGTTTTGTGTGGAGATAGCTACTCATCAACATGGGTGTTGTGTATTACAACGTTGCATTGATTATTCCACCGGAAAATACCAAGATAAACTGGTAAAGGAAATATGCAGACATGGGCTTCTACTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGAACCCAACTGCCTCATTCAAACTGCATTCTCAGTTCAAAGGGAACTACACCAACCTCTCAATGCAAAAATATAGCAGTCATGTGGTTGAAAAATGCCTCGTGCATCTTGCAGAGATCAAGTCAAGGATAGTCCAAGAACTGTTATCTTTTCCTCACTTTGAGCAGTTGCTACAAGACCTATATGGCAACTATGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGCTTTCTGCATGCATCTCTAGCTGAAGCAGTTCGCCCCTACAAAATGTTGCGCACCAGCCCTTATTGCAAAAGGGTTTTCTCGAGGAACCTGCTTAACAAGTGA 1869 0.4275 MRNEELGTWLNGFSNNNSILHRGHVTSPPQPQPSSSVFSMIHDDGVDIDAMLCSDFARMSVFHELGNVGAKTRGYGANVMDSSYPHAFLNSHSPCSFDAHAHVHEEMGTPLPTWGVSVPSDVKGHTFGPPMESSSHTQRSNTCYGHVPLQNPFHATRPFVVDCDVKKPIVFSQSQTMMQPKIAMNVNTPSSHCFPAAKERGTTSVAVTTNGDFSHSRGNPLGFQFDGGFVLQEKNVKCYAGRGCHSLWGCKESLPLLVQQAVGEELPQLIPPRVAPTRHEKNGILASDVSLSLRPLLYNFSPLSKFHGYIYYLAKHQNGCRFLQRMIDEGTSEHVLIVFNGVIDDVVELMVDPFGNYLVQKLLDVGGDDERLQVVSMLTKEPGQLIKTSLNIHGTRVVQKLITTVDSRKQIAMLMSAIQSGFLALIKDLNGNHVIQRCLQYFSCKDNEFIFYAATKFCVEIATHQHGCCVLQRCIDYSTGKYQDKLVKEICRHGLLLAQDPFGNYVVQYIIEMENPTASFKLHSQFKGNYTNLSMQKYSSHVVEKCLVHLAEIKSRIVQELLSFPHFEQLLQDLYGNYVVQRALGVTKGFLHASLAEAVRPYKMLRTSPYCKRVFSRNLLNK* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g1447 622 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 280 622 IPR033133 GO:0003723
Gso14g1447 622 SUPERFAMILY ARM repeat 303 616 IPR016024 -
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 305 340 IPR001313 GO:0003723
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 560 597 IPR001313 GO:0003723
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 489 524 IPR001313 GO:0003723
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 417 452 IPR001313 GO:0003723
Gso14g1447 622 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 6 622 - -
Gso14g1447 622 Gene3D - 296 620 IPR011989 -
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 531 562 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 310 340 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 346 377 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 458 491 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 388 418 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 422 451 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 496 512 IPR001313 GO:0003723
Gso14g1447 622 Pfam Pumilio-family RNA binding repeat 567 584 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 305 340 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 341 376 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 417 452 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 380 416 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 562 597 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 453 488 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 489 523 IPR001313 GO:0003723
Gso14g1447 622 SMART pum_5 525 559 IPR001313 GO:0003723
Gso14g1447 622 CDD Pumilio 299 617 IPR033712 GO:0003723
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 377 416 IPR001313 GO:0003723
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 453 488 IPR001313 GO:0003723
Gso14g1447 622 ProSiteProfiles Pumilio RNA-binding repeat profile. 341 376 IPR001313 GO:0003723
Gso14g1447 622 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 6 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g1447 Gso-Chr14 45045877 45051269 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g1447 - - gmx:100788865 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1447 14 45045877 45051269 Gso13g0624 13 20243139 20248432 GST
Gso14g1447 14 45045877 45051269 Gso4g0884 4 9527267 9531268 PCT
Gso14g1447 14 45045877 45051269 Gso6g0874 6 8327184 8330488 PCT
Gso4g0884 4 9527267 9531268 Gso14g1447 14 45045877 45051269 PCT
Gso6g0874 6 8327184 8330488 Gso14g1447 14 45045877 45051269 PCT