Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0862 ATGGTCTTGTGTAGGTGTCTCTCTTTTTTGACTGGGAAGAGAGAGAAAAACAAGGGTACTGAACAGTCTTCCACAGGGGACCTTAATACCCAACTTGGTGAAGTACTACACCCAAAGATTTCATCAGAGAGTCGTGATTTGAAGCCGGCCACCGTTGATGTTACAGTACCCAGTGGTGTGCAGAAGAATTCAAGGGGCAATGTGAGGGTTATGAGTCTCGAGAGTCCTGTGAAGACTGAAGTGGAGGAAGCTTATGAAGGGGAAGATGAGCATGAGGAGTCTCCTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTCCAAGTCCACGAAGCTGCTGCGATCCAAGGAAGATATCATCCATCAAGTGAAGAGATAAAATACCCCAGTTTATATGAACACCAAGCTAACATTCAATTAGAAGACAGAGACCATAAATACAGCAAAAAGAGTGATGATATAATCCAAAGTGGACATGTTAGTGATCCTGGGATTGGCAAGGCTGACTTTTGCGCTTCTCCTAAGCTCAAGCGTTCCTGCTCTGACCTGGAAAGAAGGGATGTACTAAGGAAGACTTCTCATCTCTTTCCGTCTTCAAAGTCACAGTCTTTTGAGAATTTGCAGGGGTTATCAGCATATCAGATGGTTAATCTAGAAAGCCCCAGGTCAGTGATGACTCACGGCAGTGCTGATAGAGTGATGTTGAAAAAGCATTCCTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGAATGCAATTAGGCAAACTGAAAACAATACATCCTGCAAGTGCTGCTTTAAAGAGTCAATGTGGGTACTCTTCAGACACTCTTGAAGCAAAACATGGCAAGGCATTGAGACATGTGGAATTGCCCTCACCCAGCTCATCTTATGGGGAATACTTTCACAACAGCTGCGATGATGGAAATATTGATAAGCAAAGGTGGAGCAGATTTCAAAAAGAGAATTTTGGTTTTTGGCCACAAAACCAATGGGTGGCTTTCTCAACAGAATCATCCTCCTTTAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCACCTCCTGAGGATGATTTTGATGATGACAATATTGGAACCATTGCCTTCCCACCTTCTCCTGATGCTATCCCACAATTCATAGCATCCTCAAGCACAGCTCAGTCTGTTCGACATCCAGATGCCAATCTTTCAAAAGAGATATTGAATGCCAATAGTGTGGTTCAGTCCCTGAACCCAGCCTCAACTGCAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCATCTATTTCACACTTCTCCACTCTCCGCTCTGTCAATTTGTCAAGCAATCTCATAGTTCACATCACACCTGGATTTCTCCCAAAGGGTCTTCATACTCTGAATCTGTCAAGAAACAAAATCAGCACCATTGAGGGCCTCAGAGAATTAACCCGGCTGCGGGTACTTGACTTAAGTTATAATCGCATTTCAAGAATTGGACAAGGGTTATCAAATTGTACCCTAATCAAAGAGCTATATCTCGCGGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGTTATTAAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATTTCAACAACAAAAGCATTGGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGCTGCGCAAAGTAGTTTGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGGAACTCCTACAGAAGAGCACTAAAGAAAGGTGGTGGCCAAGGAGGGTCAAGTTCCTCCAGTGTGCATAGAAGCAGTGCTAGTGTTTCCCAGAAAAGCAGGAACAGGTCAAGGAGCCGAACTAAACATCATTAG 2019 0.4408 MVLCRCLSFLTGKREKNKGTEQSSTGDLNTQLGEVLHPKISSESRDLKPATVDVTVPSGVQKNSRGNVRVMSLESPVKTEVEEAYEGEDEHEESPSIKRELSDFDLQVHEAAAIQGRYHPSSEEIKYPSLYEHQANIQLEDRDHKYSKKSDDIIQSGHVSDPGIGKADFCASPKLKRSCSDLERRDVLRKTSHLFPSSKSQSFENLQGLSAYQMVNLESPRSVMTHGSADRVMLKKHSSSQVLPSRSKRLWWKLFLWSHRNIHRMQLGKLKTIHPASAALKSQCGYSSDTLEAKHGKALRHVELPSPSSSYGEYFHNSCDDGNIDKQRWSRFQKENFGFWPQNQWVAFSTESSSFSRVDEWVKDLEIQQPPPEDDFDDDNIGTIAFPPSPDAIPQFIASSSTAQSVRHPDANLSKEILNANSVVQSLNPASTAAHISGIGIKAIPSISHFSTLRSVNLSSNLIVHITPGFLPKGLHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLIKELYLAGNKISDVEGLHRLLKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQSNISDDQLRKVVCGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSSRNSYRRALKKGGGQGGSSSSSVHRSSASVSQKSRNRSRSRTKHH* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0862 672 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 671 - -
Gso6g0862 672 Gene3D Ribonuclease Inhibitor 390 516 IPR032675 -
Gso6g0862 672 SMART LRR_typ_2 450 472 IPR003591 -
Gso6g0862 672 SMART LRR_typ_2 539 561 IPR003591 -
Gso6g0862 672 SMART LRR_typ_2 494 517 IPR003591 -
Gso6g0862 672 SMART LRR_sd22_2 539 560 - -
Gso6g0862 672 SMART LRR_sd22_2 517 538 - -
Gso6g0862 672 SMART LRR_sd22_2 472 493 - -
Gso6g0862 672 SMART LRR_sd22_2 494 516 - -
Gso6g0862 672 PANTHER NISCHARIN RELATED 4 671 - -
Gso6g0862 672 Pfam Leucine rich repeat 452 507 IPR001611 GO:0005515
Gso6g0862 672 ProSiteProfiles Leucine-rich repeat profile. 519 540 IPR001611 GO:0005515
Gso6g0862 672 SUPERFAMILY Outer arm dynein light chain 1 441 606 - -
Gso6g0862 672 Pfam Leucine Rich repeat 541 553 IPR001611 GO:0005515
Gso6g0862 672 ProSiteProfiles Leucine-rich repeat profile. 474 495 IPR001611 GO:0005515
Gso6g0862 672 MobiDBLite consensus disorder prediction 641 662 - -
Gso6g0862 672 Gene3D Ribonuclease Inhibitor 517 611 IPR032675 -
Gso6g0862 672 ProSiteProfiles Leucine-rich repeat profile. 541 562 IPR001611 GO:0005515
Gso6g0862 672 MobiDBLite consensus disorder prediction 628 672 - -
Gso6g0862 672 ProSiteProfiles Leucine-rich repeat profile. 496 518 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0862 Gso-Chr6 8199505 8203359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0862 445 571 Receptor kinase-like Gene Family AT4G08850 34.058 2.40e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0862 - - gmx:100810094 1285.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0867 4 9294001 9297881 Gso6g0862 6 8199505 8203359 GST
Gso14g1465 14 45500940 45504676 Gso6g0862 6 8199505 8203359 PCT
Gso13g0632 13 20334904 20352786 Gso6g0862 6 8199505 8203359 PCT
Gso6g0862 6 8199505 8203359 Gso14g1465 14 45500940 45504676 PCT
Gso6g0862 6 8199505 8203359 Gso13g0632 13 20334904 20352786 PCT