Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0520 ATGGAGGACGAGAAAATAGTTGGATACGTTACGGCGTTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAGGAAGAATTCCAACACAACAAGTCCAACACTTCCAATTCCGTTCTGGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACCGGTCCTGCTAGGTTCCACGACGGCTATAGCAGACTGAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCGGTGTTTATCCACTGCTTCATGGATCTTGTCGCCAAAGGACATGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTCTCTCCTAATCATCTCGAGGAAATGGAATTTGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTTTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGTCAACCTAGCTTAATTTCCGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAAGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACCATACCTTCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATCCCAGCTGAGGCGGAACAGTCCGTCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAACAGACCAGTTCTCTTTCGCAGGGTGAGAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGCCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGAGATTTTATCCTTTCATCCTCAGCAGACTCGACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTGGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGCCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGGCACACATCATGTGTCTGGTCCCTCGCTTTCAGTTCTGAAGGTTCTGTGATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAGGTGGGAGTGCTAACAGACTTAGATCGCTGAAAACTCTACCAACCAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGTGCTCTATCAAAAAGTGGCTAA 1992 0.4493 MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSVLEPDIANHLLAFSQLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGENEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGSADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0520 663 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
Gso6g0520 663 PANTHER CANNONBALL-RELATED 3 662 - -
Gso6g0520 663 MobiDBLite consensus disorder prediction 241 306 - -
Gso6g0520 663 SMART WD40_4 402 441 IPR001680 GO:0005515
Gso6g0520 663 SMART WD40_4 528 567 IPR001680 GO:0005515
Gso6g0520 663 SMART WD40_4 444 483 IPR001680 GO:0005515
Gso6g0520 663 SMART WD40_4 570 609 IPR001680 GO:0005515
Gso6g0520 663 SMART WD40_4 486 525 IPR001680 GO:0005515
Gso6g0520 663 SMART WD40_4 337 376 IPR001680 GO:0005515
Gso6g0520 663 Gene3D TFIID subunit TAF5, NTD2 domain 40 191 IPR037264 -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 441 IPR001680 GO:0005515
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 451 485 - -
Gso6g0520 663 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 618 IPR001680 GO:0005515
Gso6g0520 663 ProSitePatterns Trp-Asp (WD) repeats signature. 554 568 IPR019775 -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 377 IPR001680 GO:0005515
Gso6g0520 663 Gene3D - 489 569 IPR015943 GO:0005515
Gso6g0520 663 Gene3D - 233 488 IPR015943 GO:0005515
Gso6g0520 663 ProSitePatterns Trp-Asp (WD) repeats signature. 363 377 IPR019775 -
Gso6g0520 663 MobiDBLite consensus disorder prediction 241 287 - -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 530 - -
Gso6g0520 663 Gene3D - 570 662 IPR015943 GO:0005515
Gso6g0520 663 SUPERFAMILY Taf5 N-terminal domain-like 48 191 IPR037264 -
Gso6g0520 663 CDD WD40 409 658 - -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 612 - -
Gso6g0520 663 Pfam WD domain, G-beta repeat 529 567 IPR001680 GO:0005515
Gso6g0520 663 Pfam WD domain, G-beta repeat 448 483 IPR001680 GO:0005515
Gso6g0520 663 Pfam WD domain, G-beta repeat 571 609 IPR001680 GO:0005515
Gso6g0520 663 Pfam WD domain, G-beta repeat 488 525 IPR001680 GO:0005515
Gso6g0520 663 Pfam WD domain, G-beta repeat 406 441 IPR001680 GO:0005515
Gso6g0520 663 Pfam WD domain, G-beta repeat 346 376 IPR001680 GO:0005515
Gso6g0520 663 CDD TAF5_NTD2 60 192 IPR007582 -
Gso6g0520 663 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Gso6g0520 663 SUPERFAMILY WD40 repeat-like 338 659 IPR036322 GO:0005515
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 492 IPR001680 GO:0005515
Gso6g0520 663 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 662 IPR037783 -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 572 - -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 441 - -
Gso6g0520 663 Pfam WD40 associated region in TFIID subunit, NTD2 domain 58 186 IPR007582 -
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Gso6g0520 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 576 IPR001680 GO:0005515
Gso6g0520 663 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Gso6g0520 663 PRINTS G protein beta WD-40 repeat signature 512 526 IPR020472 -
Gso6g0520 663 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0520 Gso-Chr6 4750965 4758289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0520 535 659 Miscellaneous Gene Families AT5G08390 24.603 2.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0520 K03130 - gmx:100781563 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0525 4 5008363 5018140 Gso6g0520 6 4750965 4758289 GST
Gso14g0901 14 10791214 10806021 Gso6g0520 6 4750965 4758289 PCT
Gso17g1881 17 37660051 37680462 Gso6g0520 6 4750965 4758289 PCT
Gso6g0520 6 4750965 4758289 Gso14g0901 14 10791214 10806021 PCT
Gso6g0520 6 4750965 4758289 Gso17g1881 17 37660051 37680462 PCT