Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1881 ATGGATGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTACGCAAAACGATGACCAACTTCAACTCACCAACACCGATTCATCTCTTCAACCCGACACTCTCAATCGCGCCCAATTGGAGAGAGGTTCTGCTAGATACCATGATGGGTATGGTAGACTAAGATCATGGGCATACAGGTCACTTGACTCATACAAGCATGAGCTGCTGCGTGTGCTTTTTCCACTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGAATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCATTCGCGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTACTCATTTTAAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTACTGATGCAACATCTACACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCACATTAGCTTCCAAGTTACAGCTGGACAACCTAGCTCAACTTCTGATGATCCAGAAGCCGTTTCCCTCATTGGAAACATCAAGGATGAAGCAAACCAGATAAACCAGAAAGAAATACTTTGGGGAATGTTTAAAGACTCTGCAGAAGACTGTGTAGATAAGACTGGGTCCTTGCTTTCAGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGATTAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGCAAAAAAGGACAAGGCTGGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTGTATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACATTTTCAACTGATGTAGAACTTTCCATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACAATTGTAAATACACATAATGGTTTAAGTTGTTCATCAATATCACATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCGTCACTAAAGGTCTGGGATATGGCGAAACTTGAAAAACAACCCACCACTTCTTTTTCACAGGGAGGGAATGACACATCACAAAATGAACAAAATATTGGGCAAAATAGTGGGAAAAGACTGTGCACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCGGCTACTTTTAGTCCTGCTGGGGATTTTATTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCAATTTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCTAGCTGTTCACATGATAGAACAGCTAGGATTTGGTCCATGGACAGAATACAACCTTTGAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATGTCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTATCTTTGGCAATGTCTCCGGACGGTCGCTATATGGCATCTGGTGATGAAGACGGCACCATCATGATGTGGGACCTCTCTAGTGGCTGTTGCGTCACGCCTTTAGTCGGCCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCCGCAGATTGCACAGTCAAATTTTGGGATGTAACTACGGGTATAAAGGTTCCAAGGAATGAAGAAAAAAGTGGGAATACTAACAGACTCAGATCATTGAAAAGCTTGCCAACCAAATCTGCTTCAGTTTACTCTCTTCAGTTTTGTCGAAGGAATCTTCTATTTGCAGCTGGAGCTATTGCAAAAACTGGCTGA 1974 0.421 MDEDQIEGCVSGYLKQKGFTQNDDQLQLTNTDSSLQPDTLNRAQLERGSARYHDGYGRLRSWAYRSLDSYKHELLRVLFPLFIHCFMDLVAKGNLQEAWNFFNTFREDHEMMHSRDLQKLELVLSPTHFKEMEFAHSLRQSKFNIKICGYSYELLMQHLHSMQSTTIIGIINEHISFQVTAGQPSSTSDDPEAVSLIGNIKDEANQINQKEILWGMFKDSAEDCVDKTGSLLSDTEKGEGEGKEGENDEIKKRSIDGGKQGSSIKKAKKDKAGSATGKNAKPEANTVSAAPRIKPELPLPTFSTDVELSILEDLRNRVQLSSVALPSVNFYTIVNTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLEKQPTTSFSQGGNDTSQNEQNIGQNSGKRLCTLFQGHSGPVYAATFSPAGDFILSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEEKSGNTNRLRSLKSLPTKSASVYSLQFCRRNLLFAAGAIAKTG* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1881 657 Gene3D - 234 483 IPR015943 GO:0005515
Gso17g1881 657 Gene3D - 484 562 IPR015943 GO:0005515
Gso17g1881 657 MobiDBLite consensus disorder prediction 230 276 - -
Gso17g1881 657 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 654 IPR037783 -
Gso17g1881 657 Gene3D - 563 656 IPR015943 GO:0005515
Gso17g1881 657 CDD TAF5_NTD2 52 181 IPR007582 -
Gso17g1881 657 CDD WD40 403 656 - -
Gso17g1881 657 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Gso17g1881 657 PANTHER CANNONBALL-RELATED 1 654 - -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 435 - -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 524 - -
Gso17g1881 657 Gene3D TFIID subunit TAF5, NTD2 domain 29 180 IPR037264 -
Gso17g1881 657 PRINTS G protein beta WD-40 repeat signature 422 436 IPR020472 -
Gso17g1881 657 PRINTS G protein beta WD-40 repeat signature 506 520 IPR020472 -
Gso17g1881 657 PRINTS G protein beta WD-40 repeat signature 590 604 IPR020472 -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 565 - -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Gso17g1881 657 ProSitePatterns Trp-Asp (WD) repeats signature. 352 366 IPR019775 -
Gso17g1881 657 Pfam WD domain, G-beta repeat 403 435 IPR001680 GO:0005515
Gso17g1881 657 Pfam WD domain, G-beta repeat 523 561 IPR001680 GO:0005515
Gso17g1881 657 Pfam WD domain, G-beta repeat 442 477 IPR001680 GO:0005515
Gso17g1881 657 Pfam WD domain, G-beta repeat 482 519 IPR001680 GO:0005515
Gso17g1881 657 Pfam WD domain, G-beta repeat 565 603 IPR001680 GO:0005515
Gso17g1881 657 Pfam WD domain, G-beta repeat 334 365 IPR001680 GO:0005515
Gso17g1881 657 MobiDBLite consensus disorder prediction 230 298 - -
Gso17g1881 657 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Gso17g1881 657 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
Gso17g1881 657 SUPERFAMILY WD40 repeat-like 327 652 IPR036322 GO:0005515
Gso17g1881 657 SUPERFAMILY Taf5 N-terminal domain-like 43 179 IPR037264 -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 607 - -
Gso17g1881 657 ProSitePatterns Trp-Asp (WD) repeats signature. 590 604 IPR019775 -
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 612 IPR001680 GO:0005515
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Gso17g1881 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Gso17g1881 657 SMART WD40_4 522 561 IPR001680 GO:0005515
Gso17g1881 657 SMART WD40_4 395 435 IPR001680 GO:0005515
Gso17g1881 657 SMART WD40_4 564 603 IPR001680 GO:0005515
Gso17g1881 657 SMART WD40_4 480 519 IPR001680 GO:0005515
Gso17g1881 657 SMART WD40_4 438 477 IPR001680 GO:0005515
Gso17g1881 657 SMART WD40_4 327 365 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1881 Gso-Chr17 37660051 37680462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1881 470 656 Miscellaneous Gene Families AT5G08390 28.877 1.49e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1881 K03130 - gmx:100790500 1325.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0901 14 10791214 10806021 Gso17g1881 17 37660051 37680462 GST
Gso17g1881 17 37660051 37680462 Gso4g0525 4 5008363 5018140 PCT
Gso17g1881 17 37660051 37680462 Gso6g0520 6 4750965 4758289 PCT
Gso4g0525 4 5008363 5018140 Gso17g1881 17 37660051 37680462 PCT
Gso6g0520 6 4750965 4758289 Gso17g1881 17 37660051 37680462 PCT