Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0525 ATGGAGGACGACAAAATAGTTGGATACGTTACAGCATTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAAGAAGAATTCCAACACAACAAATCCAACACTTCCAATTCACTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTACAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTCCGCGTACTTTATCCTGTGTTTATCCACTGCTTTATGGATCTTGTCGCCAAAGGACACGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTAACCATCTTGAGGAAATGGAATTCGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGACAACCTAGCTTAATTTCCGATGACCCGGAAGCTGTTACCCTAACTGGAAGCAGCCAGGAAGCAGCAAACCTGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTTAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGATGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCAACTGGGAAAAGTGCTAAACCAGAAGCTAGCACTGTACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATCCCAACTGAAGTGGAACAGTCCGTCCTGGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATATATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGGCCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGTCACAGGGTTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTAACACCTTTGATTGGCCACACATCATGTGTCTGGTCCCTTGCTTTCAGTTCTGAAGGTTCTATTATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATGCGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAAGTGGGAGTGCTAACAGCAGACTTAGATCGCTGAAAACTTTGTCAACCAAATCTACTCCAGTTTACTCATTACGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGCGCTCTATCAAAAAGTGGTTAA 2010 0.4438 MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSLLEPDIANHLLAFSQLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERLEKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEASTVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTYINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQASSLSQGENDTSQNEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSIIASGSADCTVKLWDVNASTKVSRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSRRNLLFAAGALSKSG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0525 669 MobiDBLite consensus disorder prediction 274 288 - -
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 490 - -
Gso4g0525 669 Pfam WD domain, G-beta repeat 576 614 IPR001680 GO:0005515
Gso4g0525 669 Pfam WD domain, G-beta repeat 411 446 IPR001680 GO:0005515
Gso4g0525 669 Pfam WD domain, G-beta repeat 534 572 IPR001680 GO:0005515
Gso4g0525 669 Pfam WD domain, G-beta repeat 493 530 IPR001680 GO:0005515
Gso4g0525 669 Pfam WD domain, G-beta repeat 348 377 IPR001680 GO:0005515
Gso4g0525 669 Pfam WD domain, G-beta repeat 453 488 IPR001680 GO:0005515
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 497 IPR001680 GO:0005515
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 616 - -
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 623 IPR001680 GO:0005515
Gso4g0525 669 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 668 IPR037783 -
Gso4g0525 669 Gene3D - 254 492 IPR015943 GO:0005515
Gso4g0525 669 ProSitePatterns Trp-Asp (WD) repeats signature. 559 573 IPR019775 -
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 446 IPR001680 GO:0005515
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 581 IPR001680 GO:0005515
Gso4g0525 669 SMART WD40_4 338 377 IPR001680 GO:0005515
Gso4g0525 669 SMART WD40_4 449 488 IPR001680 GO:0005515
Gso4g0525 669 SMART WD40_4 575 614 IPR001680 GO:0005515
Gso4g0525 669 SMART WD40_4 533 572 IPR001680 GO:0005515
Gso4g0525 669 SMART WD40_4 407 446 IPR001680 GO:0005515
Gso4g0525 669 SMART WD40_4 491 530 IPR001680 GO:0005515
Gso4g0525 669 ProSitePatterns Trp-Asp (WD) repeats signature. 517 531 IPR019775 -
Gso4g0525 669 Pfam WD40 associated region in TFIID subunit, NTD2 domain 58 186 IPR007582 -
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 577 - -
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Gso4g0525 669 MobiDBLite consensus disorder prediction 243 307 - -
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 446 - -
Gso4g0525 669 ProSitePatterns Trp-Asp (WD) repeats signature. 601 615 IPR019775 -
Gso4g0525 669 SUPERFAMILY Taf5 N-terminal domain-like 48 191 IPR037264 -
Gso4g0525 669 MobiDBLite consensus disorder prediction 243 267 - -
Gso4g0525 669 SUPERFAMILY WD40 repeat-like 340 665 IPR036322 GO:0005515
Gso4g0525 669 Gene3D TFIID subunit TAF5, NTD2 domain 42 191 IPR037264 -
Gso4g0525 669 Gene3D - 575 668 IPR015943 GO:0005515
Gso4g0525 669 CDD WD40 414 664 - -
Gso4g0525 669 CDD TAF5_NTD2 60 192 IPR007582 -
Gso4g0525 669 PRINTS G protein beta WD-40 repeat signature 433 447 IPR020472 -
Gso4g0525 669 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Gso4g0525 669 PRINTS G protein beta WD-40 repeat signature 601 615 IPR020472 -
Gso4g0525 669 Gene3D - 493 574 IPR015943 GO:0005515
Gso4g0525 669 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 535 - -
Gso4g0525 669 ProSitePatterns Trp-Asp (WD) repeats signature. 364 378 IPR019775 -
Gso4g0525 669 PANTHER CANNONBALL-RELATED 3 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0525 Gso-Chr4 5008363 5018140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0525 540 665 Miscellaneous Gene Families AT5G08390 24.409 9.75e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0525 K03130 - gmx:100805953 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0525 4 5008363 5018140 Gso6g0520 6 4750965 4758289 GST
Gso14g0901 14 10791214 10806021 Gso4g0525 4 5008363 5018140 PCT
Gso17g1881 17 37660051 37680462 Gso4g0525 4 5008363 5018140 PCT
Gso4g0525 4 5008363 5018140 Gso14g0901 14 10791214 10806021 PCT
Gso4g0525 4 5008363 5018140 Gso17g1881 17 37660051 37680462 PCT