Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0513 ATGAAGTTTATGAAGTTGGGTTCCAAGCCTAATGCTCTTCAAGCTGATGGAAACTCTATCAGGTATGTCTCATCTGAATTGGCTACAGATGTTGCCGTTAATGTTGGTGATATTAAGTTTTACCTTCACAAGTTTCCTCTACTGTCAAAGAGCAACCGACTACAAAAACTGGTATCAAAAGCTAATGAAGAGAATTCTGATGATATTTACTTGGATGATTTCCCTGGAGGACCAAAGACCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGTTGTGCAGCTGAGTTCCTTGAGATGACTGAGGATGTTGACAGAGGAAACCTGGTTTCAAAGATTGAGGTGTTTCTTAACTCGAGTATCTTTCGTCGCTGGAAGGATTCTATAATTGTTCTCCAAACTTCTAAATCTCTTCTGCCATGGTCCGAGGATCTAAAGATCGTTGGAAGATGCATAGATTCCATAGCTTCTAAAACTAGTGTGGACCCAGCATACATCACTTGGTCTTACACTTGTAATAGGAAATTAACCGAACCTGATAAAATTGTAGAGGACAAGATGACATTTCTAGAGAAAATTGAGTCTGTTCCTAAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAGATCAAAGGGGAGAATGGATGGTGTTGTTATTGGGGAGGCACTAAAAACCTACGCATTAAGATGGATACCTGATTCGGTTGATACATTGGTTTCTGATGCCAACACCTCAAGGACCAAATCTGTGGTAGAAACAATTGTCTGTTTACTGCCATATGATAATGGCATCAGTTGTTCGTGTAGTTTCTTGCTGAAGCTATTGAGAGTGGCCATATTAGTCGGAGTAAATGAGTCATCAAGAGAGGAATTGATGAAGAGCATTAGCCTCAAATTGCATGAAGCTTGTGTCAAGGATTTACTGATTCCAGCAAGGTCTCCCCAGACTACCACATATGATGTTCATTTGGTACAAGGTATTTTAAATCATCATATGAATCACGAAAAGGGAATCTGCGGTATGGAGGTTGCTGAGGAGAAACATGGAGGAGAAGATAAATATACTTTAGCACGTAGGTCTTTATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGTCTCTCTAGTTTTGTTGATTTGTCACAATCCATTCCAGATTTTGCTAGACCAGATCATGATGGTCTGTACAGAGCAATAGACATCTACTTGAAGCAACACTTGAATTTGACAAAAGCTGAAAGGAAGAAGCTATGTGGACTGATGGATGTCCGGAAATTGACAGCAGGTGCTTCTGTACACGCAGCACAGAACGAACGCCTTCCTCTTCGACTTGTAGTGCAGGTTCTCTTCTTTGATCAGGTCAGGTCTTCTATCAGCTTTCGAACACCCGGCAGCAATAGCACACGTGACCCTTTATGCTCTCCACTGTACCGAGATGAGGGATGTGTGACAACAGCAGGAGATAGCTGTCAACCCCTCAAGAATCAGATGAGTCATTTGAGGATCAAGGATGAAGAGTTAGGCAAGAAGAATAGAAAAAACAGCAAAAGTGGCATTCAGTTGCTGCCATCACGGTCGTGGAGAATCTTTGACAAGTTATGGAGTATGAGAAAAAGGCATGGAGAGAATAGGAGCTCAGAGACTTCAGGGAGTTGTAGTAGCCCAACTTCTATAGGCCAGGGAGATACCAAATCATATGGCTTATCTTTGAGACACCATAGGCATTCTATCTCTTAG 1836 0.4129 MKFMKLGSKPNALQADGNSIRYVSSELATDVAVNVGDIKFYLHKFPLLSKSNRLQKLVSKANEENSDDIYLDDFPGGPKTFEICAKFCYGMTVTLNAYNVVAARCAAEFLEMTEDVDRGNLVSKIEVFLNSSIFRRWKDSIIVLQTSKSLLPWSEDLKIVGRCIDSIASKTSVDPAYITWSYTCNRKLTEPDKIVEDKMTFLEKIESVPKDWWVEDICELDIDLYKRVMVAVRSKGRMDGVVIGEALKTYALRWIPDSVDTLVSDANTSRTKSVVETIVCLLPYDNGISCSCSFLLKLLRVAILVGVNESSREELMKSISLKLHEACVKDLLIPARSPQTTTYDVHLVQGILNHHMNHEKGICGMEVAEEKHGGEDKYTLARRSLLNVGKLVDGYLGEIAHDPNLGLSSFVDLSQSIPDFARPDHDGLYRAIDIYLKQHLNLTKAERKKLCGLMDVRKLTAGASVHAAQNERLPLRLVVQVLFFDQVRSSISFRTPGSNSTRDPLCSPLYRDEGCVTTAGDSCQPLKNQMSHLRIKDEELGKKNRKNSKSGIQLLPSRSWRIFDKLWSMRKRHGENRSSETSGSCSSPTSIGQGDTKSYGLSLRHHRHSIS* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0513 611 Gene3D Potassium Channel Kv1.1; Chain A 4 129 IPR011333 -
Gso6g0513 611 CDD BTB_POZ_NPY3-like 21 124 - -
Gso6g0513 611 MobiDBLite consensus disorder prediction 573 611 - -
Gso6g0513 611 PANTHER OS12G0117600 PROTEIN 4 597 IPR043454 -
Gso6g0513 611 MobiDBLite consensus disorder prediction 579 597 - -
Gso6g0513 611 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 597 IPR029961 GO:0060918|GO:0099402
Gso6g0513 611 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Gso6g0513 611 Pfam NPH3 family 211 463 IPR027356 -
Gso6g0513 611 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Gso6g0513 611 Pfam BTB/POZ domain 25 114 IPR000210 GO:0005515
Gso6g0513 611 SUPERFAMILY POZ domain 22 116 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0513 Gso-Chr6 4681511 4686203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0513 8 487 EF-hand Containing Proteins AT3G44820 34.055 3.02e-93 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0513 - - gmx:100812575 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0517 4 4939169 4943893 Gso6g0513 6 4681511 4686203 GST
Gso14g0893 14 10531910 10537209 Gso6g0513 6 4681511 4686203 PCT
Gso17g1888 17 37773086 37778596 Gso6g0513 6 4681511 4686203 PCT
Gso6g0513 6 4681511 4686203 Gso14g0893 14 10531910 10537209 PCT
Gso6g0513 6 4681511 4686203 Gso17g1888 17 37773086 37778596 PCT