Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0517 ATGAAGTTTATGAAGCTGGGTTCCAAGCCTGATGCTCTTCAAGCTGATGGAAACTCTATCAGGTATATCTCATCTGAATTGGCTACAGATGTCACCGTTAATGTTGGTGATGTTAAGTTTTACCTTCACAAGTTCCCTCTACTGTCAAAGAGCAACCAACTACAAAAATTGGTATCAAAAGCTAATGAAGAGAATTCTCATGATATTTACTTGGATGATTTCCCTGGAGGGCCAAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGTTGTGCCGCTGAATACCTTGAGATGACTGAGGATGTTGACAGAGGAAACCTGATTTTAAAGATTGAGGTGTTTCTTAACTCAAGTATCTTCTGTCGCTGGAAGGATTCTATAATTGTTCTCCAGACTTCTAAATCTCTTCTGCCATGGTCTGAGGATCTGAAGATCGTTGGAAGATGCATAGATTCTATAGCTTCTAAAACTAGTGTGGACCCAGCATACATCACTTGGTCTTACACTTATAATAGGAAATTAACTGAACCTGATAAAATTGTCGAGGACAAGATGACATTTCTAGAGAAAATCGAGTCTGTTCCTGAGGATTGGTGGGTTGAAGACATATGTGAGCTGGACATTGATCTTTACAAACGAGTAATGGTTGCTGTGAAATCAAAGGGGAGAATGGATGGTGTTGTTATTGGGGAGGCACTAAAAACCTATGCATTAAGATGGATACCTGATTCGGTTGATACATTGGTTTCTGATGCCAACACCTCAAGGACCAAAGCCGTGGTACAAACAATTGTCTGTTTATTGTCATATGATAATGGCATTGGTTGTCCGTGTAGTTTCTTGCTGAAGCTATTGAGAGTGGCCATATTAGTCGGAGTAAACGAGTCATCAAGAGAGGAATTGATGAAGAGCATTAGCCTCAAATTGGACGAAGCTTGTGTCAAAGATTTACTGATTCCAGCAAGGTCTCTCCAGATTACCACATATGATGTTCATTTGGTACAAGGTATTTTGAATCAATATATGAATCACGAAAAGGGAAGCTGTGGTATGGAGGTTGTTGAGGAGAAACACGGAGGAGAAGATAAATATATTTTAGCACGTAGGTCTTTATTGAATGTCGGCAAGTTGGTGGATGGTTATCTTGGAGAAATTGCACATGATCCTAATCTTGGTCTCTCTAGTTTTGTTGATTTGTCACAATCCATTCCTGATTTTGCTAGACCAAATCATGATGGTCTGTACAGAGCTATAGACATCTACTTGAAGGAGCACCCGAATTTGACAAAAGCTGAAAGGAAGAAGTTATGTGGACTGATGGATGTCCGGAAATTGACAGCAGGTGCTTCTGTGCATGCAGCACAGAACGAACGCCTTCCTCTTCGAGTTATAGTGCAGGTTCTCTTCTTTGATCAGGTCAGGTCTTCTATCAGCTTTCGAACACCCGGAAACAATAGTGCACGTGACCCTTTATGCTCTCCAATGAACCGAGATGAGGGATGTGAGACAACAGCAGGAGATAGCTGCCAAGCCGCCCTCAAGAATCAGATGAGTCATTGGAGGATCAAGGATGGAGAGTTACATAAAAATGGGAAGTTGGGCAAGAAGAATAGCAAAAACAACAAAAGTGACATTCAGTTGCTGCCATCGCGGTCAAGGAGAATCTTTGACAAGTTATGGAGTGTGAGAAAAGGGCATGGAGAGAATAGGAGTTCAGAGACTTCTGGGAGTTCCAGTAGCCCAACTTCTTTAGGCCAGGGAGATACCAAATCATATGGCCTATCTTTGAGACACAAGAGGCATTCTATCTCTTAG 1857 0.4136 MKFMKLGSKPDALQADGNSIRYISSELATDVTVNVGDVKFYLHKFPLLSKSNQLQKLVSKANEENSHDIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDVDRGNLILKIEVFLNSSIFCRWKDSIIVLQTSKSLLPWSEDLKIVGRCIDSIASKTSVDPAYITWSYTYNRKLTEPDKIVEDKMTFLEKIESVPEDWWVEDICELDIDLYKRVMVAVKSKGRMDGVVIGEALKTYALRWIPDSVDTLVSDANTSRTKAVVQTIVCLLSYDNGIGCPCSFLLKLLRVAILVGVNESSREELMKSISLKLDEACVKDLLIPARSLQITTYDVHLVQGILNQYMNHEKGSCGMEVVEEKHGGEDKYILARRSLLNVGKLVDGYLGEIAHDPNLGLSSFVDLSQSIPDFARPNHDGLYRAIDIYLKEHPNLTKAERKKLCGLMDVRKLTAGASVHAAQNERLPLRVIVQVLFFDQVRSSISFRTPGNNSARDPLCSPMNRDEGCETTAGDSCQAALKNQMSHWRIKDGELHKNGKLGKKNSKNNKSDIQLLPSRSRRIFDKLWSVRKGHGENRSSETSGSSSSPTSLGQGDTKSYGLSLRHKRHSIS* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0517 618 MobiDBLite consensus disorder prediction 540 562 - -
Gso4g0517 618 MobiDBLite consensus disorder prediction 575 618 - -
Gso4g0517 618 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Gso4g0517 618 MobiDBLite consensus disorder prediction 585 604 - -
Gso4g0517 618 PANTHER OS12G0117600 PROTEIN 4 604 IPR043454 -
Gso4g0517 618 CDD BTB_POZ_NPY3-like 21 124 - -
Gso4g0517 618 Gene3D Potassium Channel Kv1.1; Chain A 4 124 IPR011333 -
Gso4g0517 618 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Gso4g0517 618 SUPERFAMILY POZ domain 22 116 IPR011333 -
Gso4g0517 618 Pfam NPH3 family 211 463 IPR027356 -
Gso4g0517 618 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 604 IPR029961 GO:0060918|GO:0099402
Gso4g0517 618 SMART BTB_4 29 127 IPR000210 GO:0005515
Gso4g0517 618 Pfam BTB/POZ domain 26 116 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0517 Gso-Chr4 4939169 4943893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0517 8 487 EF-hand Containing Proteins AT3G44820 34.055 3.41e-91 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0517 - - gmx:100784205 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0517 4 4939169 4943893 Gso6g0513 6 4681511 4686203 GST
Gso14g0893 14 10531910 10537209 Gso4g0517 4 4939169 4943893 PCT
Gso17g1888 17 37773086 37778596 Gso4g0517 4 4939169 4943893 PCT
Gso4g0517 4 4939169 4943893 Gso14g0893 14 10531910 10537209 PCT
Gso4g0517 4 4939169 4943893 Gso17g1888 17 37773086 37778596 PCT