Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1888 ATGAAGTTTATGAAGTTGGGTTCGAAGCCTGATGCTCTTCAAAGCGATGGAAAATCTATCAGGTATATATCATCTGAATTGGCTACAGATATTATCATAACTGTTGGTGAAGTTAAGTTTCACCTGCACAAGTTCCCTCTACTGTCCAAGAGTAATAGTTTACAAAAGTTGCTGTCAAAGGCTAATGAAGAGAATGCTGATGAAATTCAATTGGATGATTTTCCTGGTGGTCCCAAGGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTGGCTGCTCGTTGCGCCGCTGAGTACCTTGAGATGACTGAGGATATTGATAGAGGAAACTTGATTTTCAAAATTGAGGTGTTTCTTACCTCGAGTATCTTTCGCAGCTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTTCTACCGTGGGCTGAGGACTTAAAGATTGTTGGGAGATGTATAGATTCCATAGCTTCTAAAACTTCTGTGGATCCTGCAAACATCACTTGGTCTTACACTTATAACCGTAAATTATCGGAGCTTGATAAAATCGTTGAGGACAAGATAACACCACAAGAGAAAATTGAGCCTGTTCCTAAGGATTGGTGGGTTGAAGATATATGTGAGCTGGACATTGATCTTTATAAACGTGTAATGATTACTGTCAAGTCAAAGGGAAGAATGGACGGAGTTGTGATTGGCGAGGCACTAAAAATCTATGCTGTAAGATGGTTGCCTGATTCTGTTGATGCATTGGTTTCTGATGCTCATGCCTGGAGGAACAAATCTCTTGTAGAAACAATTGTCTGTTTGTTGCCGTGTGATAATGGCATGGGTTGTTCGTGTAGTTTCTTGCTGAAGCTACTGAAAGTGGCCATATTAGTTGAAGCTGATGAGTCTTCTAGGGGACAATTGATGAAGAGCATTGGTCTAAAATTTCATGAAGCTTCTGTCAAAGATTTACTGATTCCAGCAAGGTTCCCCCAGAATACCAAATATGATGTTGATTTGGTGCAAGATCTTTTGAATCTATACATGACTAACATAAAGGGAAGCCGTGATGTGGTGGTTGAGGAGAAGAAAGATAGAGCAAATGATGAGTCAATTTTAGGACAGAGGTCTTTGTTGAATGTTGGCAAGTTGGTTGATGGTTATCTTGGAGAAATTGCACATGATCCAAATCTCAGCCTCTCTAGCTTTGTTGCTCTATCACAGTCAATTCCAGAGTTTGCTAGACCAAATCATGATGGTCTGTACAGAGCTATAGACGTATACTTGAAGGAGCACCCAAGTTTGACAAAATCTGAAAGGAAGAACATATGTGGACTAATGGATGTCAAGAAATTGACAGTAGAAGCATCGATGCATGCTGCACAGAATGAACGCCTTCCTCTTCGAGTTGTGGTGCAGGTTCTCTATTTTGAGCAGGTCAGAGCTGCTTCCAATGCTCGTGCACTCGGCAACAGTCCACACAATTCTACAAACACTCATGTCAACGGAGACGAGGAGTGTGCGAAATCGGGGGGAGAAAGCTGCCAATCCCTCGACAACCAGATGTGTCACATGAAGATTAGAGATGAACAGTTGCAAAAGAATGGGAAGTTGAACAAGAAGAGTAGCAAGAACAGCAGAAGTGGCATGCAGTTGCTGCCATCTAGGTCAAGGAGAATCTTTGACAAGCTATGGATTGTTGGTAAGGGACAAGGAGAAAATAGAAGCTCAGAGACCTCAGGGAGTTCCAATAGCCCTACTTCTGTAGTCCCTGGAGATACCAAATCATCTGGCTCATCATTGAGACACAGGAGGCATTCTATCTCTTAG 1851 0.4155 MKFMKLGSKPDALQSDGKSIRYISSELATDIIITVGEVKFHLHKFPLLSKSNSLQKLLSKANEENADEIQLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDIDRGNLIFKIEVFLTSSIFRSWKDSIIVLQTTKSLLPWAEDLKIVGRCIDSIASKTSVDPANITWSYTYNRKLSELDKIVEDKITPQEKIEPVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKIYAVRWLPDSVDALVSDAHAWRNKSLVETIVCLLPCDNGMGCSCSFLLKLLKVAILVEADESSRGQLMKSIGLKFHEASVKDLLIPARFPQNTKYDVDLVQDLLNLYMTNIKGSRDVVVEEKKDRANDESILGQRSLLNVGKLVDGYLGEIAHDPNLSLSSFVALSQSIPEFARPNHDGLYRAIDVYLKEHPSLTKSERKNICGLMDVKKLTVEASMHAAQNERLPLRVVVQVLYFEQVRAASNARALGNSPHNSTNTHVNGDEECAKSGGESCQSLDNQMCHMKIRDEQLQKNGKLNKKSSKNSRSGMQLLPSRSRRIFDKLWIVGKGQGENRSSETSGSSNSPTSVVPGDTKSSGSSLRHRRHSIS* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1888 616 Pfam NPH3 family 211 464 IPR027356 -
Gso17g1888 616 SUPERFAMILY POZ domain 22 115 IPR011333 -
Gso17g1888 616 Pfam BTB/POZ domain 26 116 IPR000210 GO:0005515
Gso17g1888 616 Gene3D Potassium Channel Kv1.1; Chain A 5 118 IPR011333 -
Gso17g1888 616 PANTHER OS12G0117600 PROTEIN 4 604 IPR043454 -
Gso17g1888 616 MobiDBLite consensus disorder prediction 577 616 - -
Gso17g1888 616 MobiDBLite consensus disorder prediction 579 604 - -
Gso17g1888 616 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Gso17g1888 616 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 604 IPR029961 GO:0060918|GO:0099402
Gso17g1888 616 CDD BTB_POZ_NPY3-like 21 124 - -
Gso17g1888 616 SMART BTB_4 29 127 IPR000210 GO:0005515
Gso17g1888 616 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Gso17g1888 616 MobiDBLite consensus disorder prediction 495 521 - -
Gso17g1888 616 MobiDBLite consensus disorder prediction 495 511 - -
Gso17g1888 616 MobiDBLite consensus disorder prediction 538 561 - -
Gso17g1888 616 MobiDBLite consensus disorder prediction 545 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1888 Gso-Chr17 37773086 37778596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1888 22 507 EF-hand Containing Proteins AT3G44820 33.918 2.50e-94 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1888 - - gmx:100809437 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0893 14 10531910 10537209 Gso17g1888 17 37773086 37778596 GST
Gso17g1888 17 37773086 37778596 Gso4g0517 4 4939169 4943893 PCT
Gso17g1888 17 37773086 37778596 Gso6g0513 6 4681511 4686203 PCT
Gso4g0517 4 4939169 4943893 Gso17g1888 17 37773086 37778596 PCT
Gso6g0513 6 4681511 4686203 Gso17g1888 17 37773086 37778596 PCT