Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1702 ATGGAAGCAGTGAGAGCTGGTCGAGAAGGAGCAATAGGTCTAGGTCAAGGTGATGGCGTAGCCAAGGACAGCACTGAGACTGAACTCACCAAAATCCGTCTCCTCAGGGCAATTGTTGAAACCCGTGATCCCTCTTCCAAGATCTATTGTAGCCAGGAAGAGGATGATTTTATGATTAGAAGATTCCTGCGTGCTCGTGATTTAGATGTAGAGAAGGCTTCGGCAATGCTCCTCAAGTACTTGAAATGGAGAAATTCATTTGTTCCAAATGGCTCTGTATCTGTGTCAGATGTTCCTAACGAACTTGCACAAGATAAGGTGTTCATGCAAGGACACGACAAGATAGGTCGACCTATACTTATGGTCTTCGGTGGAAGACATTTTCAGAACAAGGATGGTCTTGATGAATTCAAGCGATTTGTTGTTTATGTTCTTGATAAAGTATGTGCAAGTATGCCACCTGGGCAAGAAAAGTTTGTCGGTATAGCAGAACTTAAGGGATGGGGATACTCAAACAGTGACGTGCGTGGATATCTTAGTGCTCTATCCATTTTGCAGGATTACTACCCAGAGAGATTGGGGAAGTTGTTTATTGTGAACGCACCATACATCTTTATGAAAGTGTGGCAAATTGTTTACCCATTCATTGACAACAAAACCAAGAAAAAGATAGTATTTGTGGAGAAAAATAAGGTGAAATCAACACTGCTAGAAGAGATGGAGGAAAGTCAGGTCCCAGAGATATTCGGTGGCTCACTGCCATTAGTCCCAATTCAAGATAGCTAA 786 0.4249 MEAVRAGREGAIGLGQGDGVAKDSTETELTKIRLLRAIVETRDPSSKIYCSQEEDDFMIRRFLRARDLDVEKASAMLLKYLKWRNSFVPNGSVSVSDVPNELAQDKVFMQGHDKIGRPILMVFGGRHFQNKDGLDEFKRFVVYVLDKVCASMPPGQEKFVGIAELKGWGYSNSDVRGYLSALSILQDYYPERLGKLFIVNAPYIFMKVWQIVYPFIDNKTKKKIVFVEKNKVKSTLLEEMEESQVPEIFGGSLPLVPIQDS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1702 261 SUPERFAMILY CRAL/TRIO N-terminal domain 22 90 IPR036273 -
Gso5g1702 261 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 95 257 IPR001251 -
Gso5g1702 261 Pfam CRAL/TRIO, N-terminal domain 45 78 IPR011074 -
Gso5g1702 261 SMART sec14_4 101 254 IPR001251 -
Gso5g1702 261 SUPERFAMILY CRAL/TRIO domain 98 254 IPR036865 -
Gso5g1702 261 Pfam CRAL/TRIO domain 106 251 IPR001251 -
Gso5g1702 261 Gene3D - 20 260 IPR036865 -
Gso5g1702 261 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 22 261 - -
Gso5g1702 261 PANTHER OS03G0850700 PROTEIN 22 261 - -
Gso5g1702 261 CDD SEC14 107 251 IPR001251 -
Gso5g1702 261 SMART CRAL_TRIO_N_2 55 80 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1702 Gso-Chr5 40271882 40280986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1702 61 247 Acyl Lipid Metabolism Gene Families AT5G47730 27.861 1.09e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1702 - - gmx:548015 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1702 5 40271882 40280986 Gso8g0061 8 563227 568515 GST
Gso5g1702 5 40271882 40280986 Gso4g1707 4 47094603 47097463 PCT
Gso5g1702 5 40271882 40280986 Gso6g1384 6 13571958 13574997 PCT
Gso4g1707 4 47094603 47097463 Gso5g1702 5 40271882 40280986 PCT
Gso6g1384 6 13571958 13574997 Gso5g1702 5 40271882 40280986 PCT