Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1254 ATGAGAACAAGGAGAGGAGCGTGTTACTCTGGAGTAGTCTCAAGGATGTGTTCCGATGCGAGGGTTTCCAAGAAAAAAAACAAGGATCTGCACATGCACATGCATATGCATATGCATGTCCCCGCCGGAGACTCCATTATTTATAGCCGGAAAAGGCAGAAGAAAACGCCGGAGAAAACCGCCGGCGCTGATTACGAATTTTTCGAGTCTTTGCCGGACGACCTCGTAATCTCCATCTTCTGCAAACTTAGTTCCACCGCCACTAAACCTTCCGATTTCGTCAATATTTTAATCACGTGCAAAAGATTAAACAGATTAGCACTTCATTCGCTTGTATTATCCAAAGCCTCGCCGAAAACTTTCACTATTAAAGCAAGAGATTGGTGCGATTCGGCACACAAATTCCTCAAACACTGTGCCGATGCCGGAAACGTTGAAGCTTGCTATACTTTAGGCATGATTCGGTTCTACTGTTTGCAAAACCGAGGGAGCGGCGCGTCGTTTATGGCGAAGGCGGCCATTAACTCTCACGCGCGGGCTCTGTATGCGCTGGCCGTGATTCAGTTCAACGGCAGCGGTGGCACGAAGAGCGACAAGGACCTACGCGCCGGCGTGGCGCTGTGCGCCAGAGCGGCGTTTCTTGGCCACGTCGATGCGATGCGCGAACTCGGCCACTGCCTGCAGGACGGTTACGGCGTGCGGCAGAACATCGCCGAGGGACGGCGGTTCCTCGTGCAGGCAAACGCGCGCGAGCTCGCCGCCGTGCTGTCTACCGGCGCCGCCGCGCGCACCTGGCTGAGTTGGAATCTTCAGCCGCAGCAGCTCCGGCAGGGGTCCGGGTGTCCGCTTCTCAGCGATTTCGGATGCAACGTGCCGGCGCCGGAGGTGCACCCCGCGAGCCTGTTCATGGCGGAGTGGTTCGCCGCGCGGGGCGGTTCGCCGGGACCGGGGCTGAGACTCTGTTCTCACGCGGGGTGCGGGAGGCCCGAGACGAGGAAGCACGAGTTTCGAAGGTGTTCTGTGTGCGGCGTGGTGAATTATTGCTCACGCGCGTGCCAAGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAGTGCTCCCCCGTGCAGCGGTGGCTCGAGGAGGACGGCGAAGATGTCGGTAACGACGACGGTGACGGAGAGGTGGAGGTTATGGTAGATAGTTAG 1185 0.5755 MRTRRGACYSGVVSRMCSDARVSKKKNKDLHMHMHMHMHVPAGDSIIYSRKRQKKTPEKTAGADYEFFESLPDDLVISIFCKLSSTATKPSDFVNILITCKRLNRLALHSLVLSKASPKTFTIKARDWCDSAHKFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASFMAKAAINSHARALYALAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDAMRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTGAAARTWLSWNLQPQQLRQGSGCPLLSDFGCNVPAPEVHPASLFMAEWFAARGGSPGPGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKFRHKAECSPVQRWLEEDGEDVGNDDGDGEVEVMVDS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1254 394 SUPERFAMILY HCP-like 129 247 - -
Gso5g1254 394 MobiDBLite consensus disorder prediction 375 394 - -
Gso5g1254 394 Gene3D - 320 372 - -
Gso5g1254 394 Gene3D Tetratricopeptide repeat domain 106 279 IPR011990 GO:0005515
Gso5g1254 394 MobiDBLite consensus disorder prediction 376 394 - -
Gso5g1254 394 Pfam MYND finger 325 365 IPR002893 -
Gso5g1254 394 ProSiteProfiles Zinc finger MYND-type profile. 323 365 IPR002893 -
Gso5g1254 394 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 48 392 - -
Gso5g1254 394 SUPERFAMILY F-box domain 55 124 IPR036047 GO:0005515
Gso5g1254 394 PANTHER MYND DOMAIN-CONTAINING 48 392 IPR044508 -
Gso5g1254 394 SUPERFAMILY HIT/MYND zinc finger-like 320 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1254 Gso-Chr5 36079656 36081491 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1254 - - gmx:100798174 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1254 5 36079656 36081491 Gso8g0868 8 8063738 8065593 GST
Gso18g0056 18 494687 496532 Gso5g1254 5 36079656 36081491 PCT
Gso13g1566 13 30984145 30985952 Gso5g1254 5 36079656 36081491 PCT
Gso5g1254 5 36079656 36081491 Gso18g0056 18 494687 496532 PCT
Gso5g1254 5 36079656 36081491 Gso13g1566 13 30984145 30985952 PCT