Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0056 ATGTCCTGCCGGAAAAGACAAAAGACTTCGCCGGACAAAACCTCCGACGACTTCTTCGACTCTCTCCCCGACGACCTTGTCCTCTCTATCCTCTGCAAGCTCAGCTCCACCGCAACTTCCCCCTCCGATTTCATTAGTGTCTTAATAACGTGCAAGAGACTAAACTCCTTAGGCCTTCACTCTCTTGTGTTATCAAAAGCTTCCCACAAAACATTCTCAGTCAAAGCCAAAAACTGGTGCGACTCTCTTCACCGTTTCCTCAAACATTGTGCAGATGCCGGAAACATTGAAGCCTGTTACACTCTCGGCATGATTCGGTTTTACTGCTTGCAAAACAGAGGGAGCGGCGCGTCGCTGATGGCGAAGGCGGCGATGAATTCTCACGCGCCGGCGCTGTACTCGCTCGCGGTGATACAGTTCAACGGAAGCGGCGGCACCAAAAACGACAAGGACCTTCGAGCGGGTGTGGCGCTTTGCGCACGCGCTGCGTTCCTCGGTCATATCGACGCGCTGCGTGAGCTTGGTCATTGCTTGCAAGACGGTTACGGCGTTAAGCTAAACGTAACGGAGGGACGACGGTTTTTGGTGCAAGCAAACGCTCGTGAACTCGCCGCCGTGCTCTCCGCCGGGAATACCAAGCGCCCCTGGCTGACCTGGAGCCACCACCCTGTCACCCACCCGCGGCTCCGGTCGGGTTGCCCGTTGATGAGTGATTACGGGTGCAATGTTCCGGCGCCGGATGCTCACCCGGCGAGTCAGTTTATGTCGGAGTGGTTTGATATCCGGGGCGGGTTTCCGGGTCCGGATATGAGGCTTTGTTCTCATTCGGGTTGCGGGCGACCCGAGACAAGGAGGCACGAGTTTCGAAGGTGTTCGGTTTGCGGTTTGGTGAATTATTGCTCACGCGCTTGTCAGGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAATGTGCTACCGTTGAGAGGTGGCTCGATGACGACGGCGAAGGCGTCGCCGGTGAGAATGACGGCGGCGGAGATGACGGGGTAATGATGGTTAATAGTTAG 1047 0.5616 MSCRKRQKTSPDKTSDDFFDSLPDDLVLSILCKLSSTATSPSDFISVLITCKRLNSLGLHSLVLSKASHKTFSVKAKNWCDSLHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKLNVTEGRRFLVQANARELAAVLSAGNTKRPWLTWSHHPVTHPRLRSGCPLMSDYGCNVPAPDAHPASQFMSEWFDIRGGFPGPDMRLCSHSGCGRPETRRHEFRRCSVCGLVNYCSRACQALDWKFRHKAECATVERWLDDDGEGVAGENDGGGDDGVMMVNS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0056 348 SUPERFAMILY HIT/MYND zinc finger-like 272 322 - -
Gso18g0056 348 MobiDBLite consensus disorder prediction 328 348 - -
Gso18g0056 348 Pfam MYND finger 278 317 IPR002893 -
Gso18g0056 348 SUPERFAMILY HCP-like 84 198 - -
Gso18g0056 348 Gene3D - 267 322 - -
Gso18g0056 348 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 1 348 - -
Gso18g0056 348 SUPERFAMILY F-box domain 12 75 IPR036047 GO:0005515
Gso18g0056 348 Gene3D Tetratricopeptide repeat domain 66 214 IPR011990 GO:0005515
Gso18g0056 348 PANTHER MYND DOMAIN-CONTAINING 1 348 IPR044508 -
Gso18g0056 348 ProSiteProfiles Zinc finger MYND-type profile. 275 317 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0056 Gso-Chr18 494687 496532 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0056 - - gmx:100797397 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0056 18 494687 496532 Gso13g1566 13 30984145 30985952 GST
Gso18g0056 18 494687 496532 Gso5g1254 5 36079656 36081491 PCT
Gso18g0056 18 494687 496532 Gso8g0868 8 8063738 8065593 PCT
Gso5g1254 5 36079656 36081491 Gso18g0056 18 494687 496532 PCT
Gso8g0868 8 8063738 8065593 Gso18g0056 18 494687 496532 PCT