Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1566 ATGCGAACGAGGAGACGCCTCTCTTATCTAAAAACCATGTCTTGCCGGAAAAGACAAAAGACTTCGCCGGACAAAACCTCCGATTGCTTCGACTCTCTCCCTGACGACCTCGTCCTCTCTATCCTCTGCAAGCTCAGCTCCACCGCCACCTCCCCCTCCGATTTCATCAGTGTCTTAATAACGTGCAAGAGACTAAACTCCTTAGGCCTTCACTCTCTTGTCTTATCAAAAGCTTCCCACAAAACATTCTCAGTCAAAGCCAAAAACTGGTGCGACTCTCTTCACCGTTTCCTCAAACATTGTGCCGACGCCGGAAACATTGAAGCCTGTTACACTCTCGGCTTGATTCGGTTTTATTGTTTGCAAAACAGAGGGAGCGGCGCGGCGCTGATGGCGAAGGCAGCGATGAACTCTCACGCGCCGGCGCTGTACTCGCTCGCGGTGATACAGTTCAACGGAAGCGGCGGCACGAAAAACGACAAGGACCTTCGAGCGGGTGTGGCGCTTTGCGCACGCGCGGCTTTCCTCGGTCACATCGACGCGCTTCGGGAGCTTGGTCATTGCCTTCAAGACGGTTACGGCGTTAAACAAAACGTAACGGAGGGTCGACGGTTTTTGGTGCAAGCCAACGTGCGTGAACTCGCCGCCGTGCTCTCCGCCGGGAATAACAAGCGTCCCTGGCTGACGTGGAGCCACCAACCTGTCCCCCACCCGAGGCTCCGGTCGGAAACCGGGTCGGGTTGTCCGCTGTTGAGTGATTACGGCTGCAACGTTCCGGCGCCGGAGGTTCACCCGGCGAGTCAGTTCATGTCGGAGTGGTTTGATATTCGGGGCGGGTTTCCGAGTGCGGGTATGAGACTCTGTTCTCAATCGGGTTGCGGGCGACCCGAGACAAGGAGGCACGAGTTTCGAAGGTGTTCGGTTTGTGGTGTGGTGAACTATTGCTCACGCGCGTGTCAGGCGCTTGATTGGAAGTTTCGGCACAAGGCGGAATGTGCTCCCGTTGAGAGGTGGCTCGATGACGACGACGAAGATGTCGCCGGCGAGAATGACGGCGGAGATGACGGAGTAATGATGGTTGATAGTTAG 1089 0.5601 MRTRRRLSYLKTMSCRKRQKTSPDKTSDCFDSLPDDLVLSILCKLSSTATSPSDFISVLITCKRLNSLGLHSLVLSKASHKTFSVKAKNWCDSLHRFLKHCADAGNIEACYTLGLIRFYCLQNRGSGAALMAKAAMNSHAPALYSLAVIQFNGSGGTKNDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVTEGRRFLVQANVRELAAVLSAGNNKRPWLTWSHQPVPHPRLRSETGSGCPLLSDYGCNVPAPEVHPASQFMSEWFDIRGGFPSAGMRLCSQSGCGRPETRRHEFRRCSVCGVVNYCSRACQALDWKFRHKAECAPVERWLDDDDEDVAGENDGGDDGVMMVDS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1566 362 Pfam MYND finger 293 332 IPR002893 -
Gso13g1566 362 Gene3D - 280 336 - -
Gso13g1566 362 PANTHER MYND DOMAIN-CONTAINING 12 362 IPR044508 -
Gso13g1566 362 SUPERFAMILY F-box domain 19 86 IPR036047 GO:0005515
Gso13g1566 362 SUPERFAMILY HCP-like 96 209 - -
Gso13g1566 362 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 12 362 - -
Gso13g1566 362 Gene3D Tetratricopeptide repeat domain 76 224 IPR011990 GO:0005515
Gso13g1566 362 MobiDBLite consensus disorder prediction 343 362 - -
Gso13g1566 362 ProSiteProfiles Zinc finger MYND-type profile. 290 332 IPR002893 -
Gso13g1566 362 SUPERFAMILY HIT/MYND zinc finger-like 288 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1566 Gso-Chr13 30984145 30985952 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1566 - - gmx:100798136 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0056 18 494687 496532 Gso13g1566 13 30984145 30985952 GST
Gso13g1566 13 30984145 30985952 Gso5g1254 5 36079656 36081491 PCT
Gso13g1566 13 30984145 30985952 Gso8g0868 8 8063738 8065593 PCT
Gso5g1254 5 36079656 36081491 Gso13g1566 13 30984145 30985952 PCT
Gso8g0868 8 8063738 8065593 Gso13g1566 13 30984145 30985952 PCT