Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1232 ATGCCTCCTTCAAACTTCCCTCTTCGTTGGGAGAGCACAGGAGACCGATGGTGGTATGCATCTCCAATTGATTATGCTGCTGCAAATGGCCTCTATGATCTGGTCACTGAGCTTCTCCACCTTGACACCAACCTCCTCATTAAGCTCACTTCCCTTCGCCGAATTCGCCGCCTTGAAGCCGTGTGGGACGATGAGTCCAAGTTTGAGGATGTTGCCAAGTGCCGGTCCAAGGTTGCAAGGAATCTTATGATTGAGTGTGAGACAGGAAGAGGGCACAACTCTCTTATCCTTGCAGGCTATGGTGGATGGCTTCTCTACACTGCTGCTTCGGCTGGGGATGTAGACTTTGTTCTTGAGTTGTTGGGGAGAGACCCTCTTTTGGTGTTTGGTGAGGGAGAGTATGGTGTCACTGACATGTTTTATGCTGCAGCCAGGGGCAAGAACTGTGAGGTCTTTAAGCTCCTGCTTCATTCTGCTCTTTCAAGAAAGGAGTGCCTTGGTGGCAGTGAAGCAGAATTGGAAGAGAAGTTGGATGAAGGTTCTAAGGTTTTCAAGAGGGATGTGATGAATAGGGCCATTCATGCTGCTGCCAGAGGAGGGAATTGGGAAATACTGAAGCAGATTCTAGGAAGTGTTTCTGTTTCTCAGGTTTTGTCTTATAGAGATGCCCTAGGATGTACTGTCTTGCATGCAGCAGCTGCAAGAGGCCAGGTTGAGGTGGTGAGAAATCTAATTGAATCCTATGATATCATCAACTCAGCTAATGCTCAAGGCAATACAGCATTACATGTGGCCTCTTACAAAGGTTACTTACCCGTGGTAGAGATTCTGGTTGGAGCATCTCCCTTGTTAGCAACGTTAACCAATCACTATGGAGATACTTTTCTTCACATGGTAGTGGCTGGTTTCAGAAGCCCTGGTTTCTGTAGACTGGACAAGCACACTGAGCTCATGAAGCAACTGACAAGTGAAAAGATTGTGAACATGAAGGACATCATCAATGTCAGGAACAATGATGGAAGAACAGCTCTTCATGTTGCTGTGATTCATAATATCCAATGTGATGTAGTGGAATTACTGATGTCTTTTCCATCAATTGATTTGAATATTCGCGATGCTGATGGGATGACCCCCTTGGATCATCTTAGACTAAAATCACGATCAGCATCTTCTGAAATCTTAATCAAGCAGTTAATTTCAGCTGGAGGGATCTCTAATTATCAGGACTATGTGACGAGAAATGCCCTTGTGAAGCATCTTAGGACTCATGGTATTGGAGGCAGTCCCGGAACATCATTTAGAATACCAGATTCTGAGATATTGTTATACACAGGCATTGAGAATTCATGTGATTCCAATTATGATCAGGCAAGTGTAGAATCAAATTCATGGTCAAGTGAAATAAACAACTATGACACAGCCAATTCCCCATGTAACAGCAAGTCTAGTTCTGTCAATTATGGTGCAAGGCACTTAAAGTTTCTGCTCCAAAGTTCTAGAAGAAGAGACACAAAAGAAGCAGCCTCAGATTTAGAAGATGATGTTTCTGTGAATTCCTTCGGTTCAAGGAACAACTTGGAAGACTTTCCAATCCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTATCTTCCTAGTCCTTCAGCCAAAAAACATTTTCATGCAGGTCTAGTACAAGGTGTGATTAAGGTAAAGCCACAAATGCCTCTACCTGTTCATTCAACATCTAATCTTTTTCAAGAACTATCTATCTCTTCTCATTCTTCGAATAATAAGCAAAAACGTGTTGATATAATGGGACCCTCTTGCTCCAATCGACCAATGGATGGTGATGGCACACTACAATTGAGCTATAAGCAGGGCTCTTTCAATAAGAAACTGATGAATCGATATTTTTCTTTTGGAGCACATGGCCAGGCTTTGGAGGATGCAAATAGCTGCACGATGTCAAATGGCAGTTCCAAGCATTTTAGTTCTTTAGTTGCATAA 2025 0.4286 MPPSNFPLRWESTGDRWWYASPIDYAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLEAVWDDESKFEDVAKCRSKVARNLMIECETGRGHNSLILAGYGGWLLYTAASAGDVDFVLELLGRDPLLVFGEGEYGVTDMFYAAARGKNCEVFKLLLHSALSRKECLGGSEAELEEKLDEGSKVFKRDVMNRAIHAAARGGNWEILKQILGSVSVSQVLSYRDALGCTVLHAAAARGQVEVVRNLIESYDIINSANAQGNTALHVASYKGYLPVVEILVGASPLLATLTNHYGDTFLHMVVAGFRSPGFCRLDKHTELMKQLTSEKIVNMKDIINVRNNDGRTALHVAVIHNIQCDVVELLMSFPSIDLNIRDADGMTPLDHLRLKSRSASSEILIKQLISAGGISNYQDYVTRNALVKHLRTHGIGGSPGTSFRIPDSEILLYTGIENSCDSNYDQASVESNSWSSEINNYDTANSPCNSKSSSVNYGARHLKFLLQSSRRRDTKEAASDLEDDVSVNSFGSRNNLEDFPIPLRQRYSKMCSLPNNKRTLSIRTYLPSPSAKKHFHAGLVQGVIKVKPQMPLPVHSTSNLFQELSISSHSSNNKQKRVDIMGPSCSNRPMDGDGTLQLSYKQGSFNKKLMNRYFSFGAHGQALEDANSCTMSNGSSKHFSSLVA* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1232 674 Pfam Ankyrin repeats (3 copies) 193 281 IPR002110 GO:0005515
Gso5g1232 674 ProSiteProfiles Ankyrin repeat profile. 257 278 IPR002110 GO:0005515
Gso5g1232 674 ProSiteProfiles Ankyrin repeat region circular profile. 224 246 - -
Gso5g1232 674 Gene3D - 12 420 IPR036770 -
Gso5g1232 674 ProSiteProfiles Ankyrin repeat profile. 224 256 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 257 286 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 18 47 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 339 370 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 134 164 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 100 129 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 224 253 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 188 218 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 291 331 IPR002110 GO:0005515
Gso5g1232 674 SMART ANK_2a 374 407 IPR002110 GO:0005515
Gso5g1232 674 ProSiteProfiles Ankyrin repeat region circular profile. 257 278 - -
Gso5g1232 674 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 668 - -
Gso5g1232 674 SUPERFAMILY Ankyrin repeat 105 395 IPR036770 -
Gso5g1232 674 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 668 - -
Gso5g1232 674 Pfam Ankyrin repeat 339 372 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1232 Gso-Chr5 35844678 35848050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1232 105 380 Miscellaneous Gene Families AT2G31820 30.496 7.74e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1232 - - gmx:100791999 1348.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1232 5 35844678 35848050 Gso8g0846 8 7863216 7866615 GST
Gso18g0083 18 697783 701144 Gso5g1232 5 35844678 35848050 PCT
Gso13g1538 13 30795942 30799365 Gso5g1232 5 35844678 35848050 PCT
Gso5g1232 5 35844678 35848050 Gso18g0083 18 697783 701144 PCT
Gso5g1232 5 35844678 35848050 Gso13g1538 13 30795942 30799365 PCT