Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0083 ATGCCTCCATACTTGCCTCTTCGCTGGGAGAGTACGGGAGAACAATGGTGGTATGCATCTCCCATCGATTGCGCCGCTGCCAACGGCCACTATGATCTGGTGGTGGAGCTTCTCCACCTGGATACCAACCTCCTCATCAAGCTCACTTCCCTCCGCAGAATCCGCCGCCTCGAAACCGTGTGGGACGACGAGAAACACTTGGAGAACGTCGCGAAATGTCGCTCGCAGGTTGCCAGGAATCTCATGCTGCAATGCGAGACAGGAAGAGGACACAATTCTCTCATTCGCGCCGGCTACGGCGGGTGGCTTCTCTACACTGCTGCCTCAGCTGGTGACGTGGATTTTGTTCGTGAATTGTTGGGGAAGTACCCTGCGCTCGTGTTTGGTGAAGGAGAGTATGGAGTCACTGAGATACTGTATGCTGCGGCGAGGAGCAATAGTTGTGAGGTGTTTGAGCTTCTGCTTCGTTCTGCTCTCTCGCCGCCGCAAATGGAGGATGTTTACGAGAGGGACATGATGAATAGGGCAGTTCATGCTGCTGCCAGAGGAGGGAACTGGGAGACGCTGAAACGGCTTGTGGGGAACGGTTCTGGCGTTTTGGGCTTTAGAGATGCTCAAGGATGCACTGCTCTGCATACTGCAGCTGGTAGAGGACAGGTTGAGGTGGTGAGAAATCTACTTGCATCAATTGATGTTGTAAACTTAACAGATGATCAAGGGAACACAGCATTACATATAGCTTCTTACAGGGGTCACTTAGCAGTGGTTGAGATTCTGATTCTTGCATCCCGCTCACTAGCATTGTTAACCAATCACTACGGAGATACTTATATGGCGGTGGCTGGTTTCAGAAGTCCTGGTTTCCGTAGACTGGACAAGCATACTGAGCTCATGAGGCAATTGGTAAGTGGAAAGACTGTGAACTTACAGGACATTATCAATGTTAAGAACAACGATGGAAGAACGGCGCTTCATGTATCCGTGATGGATAATATTCAATGTGAGCTAGTGGAATTGTTGATGTCTGTGCCATCAATTGATTTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTTTAAAACAAAGGGCGCGATCAGCATCATCTGATATATTGATCAAGCAAATGATTTCTGCTGGAGGGGTCTCTAAATGTCAGGATGCTGTGGCAGGAAATGCCCTTTGCACTCATGACAAAGCCCATGTCATTGGAGGCAGTCCTGGGACTTCATTTAGAATACCAGATGCAGAGATATTCTTGTACACTGGCATTGAGAATTCATCAGATACCACCAATTATGATCAAGCAAGTGTGGAATCATATTCCTGCTCAAACGAACTAAGCAATTCTGACTCAGCCAATTCCCCACATAACAAGAAGTCTAGTTCTGTCAATGTAAGGCGCTCAAAGTTTCGTCTCCACTGGCCTAGGAGAAGAGAGACAAAAGCAGCTGCCTCAGAATTGGAAGATGATGATTCTCTTGACCCTTTCAGTTCAAGTAGAAACTTGGAAGAGTTTCCAATCCCGTTGCGGCAAAGATACTCACAACCATGCTCCCATCCAAACAACAAAAGAACACAATCTATGAGGACTTCTCTTCCAAGTCCATCCTCCAATGTGAAATTCAGTGCAGGTCTAATGCAAGGTGTAATTCAGCTAAAGCCACATTCTGCTCATTCAACTCCTAGTCCTTTCCAAGAATTATCTGTGGCTTCTCTCTTTTACATCAAGGAACAAAAGGGTGTTGATATAATTGGACCCTCTTGCTCTAATGGATCAATAGATGACGGCACTCTTCTATTGAACTACAAACACTGTTCCTTCAATAAGAAATTAATGGATGGGTATTTTTCTTTTGGAGCACAGGGCCTGGCTGTTGAAGATTCCAATAGCTGCGCAAAGTCAAACAGCGGTTACAAACGTTTAAGTTCCATAGTTGCCTAA 1950 0.4641 MPPYLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDTNLLIKLTSLRRIRRLETVWDDEKHLENVAKCRSQVARNLMLQCETGRGHNSLIRAGYGGWLLYTAASAGDVDFVRELLGKYPALVFGEGEYGVTEILYAAARSNSCEVFELLLRSALSPPQMEDVYERDMMNRAVHAAARGGNWETLKRLVGNGSGVLGFRDAQGCTALHTAAGRGQVEVVRNLLASIDVVNLTDDQGNTALHIASYRGHLAVVEILILASRSLALLTNHYGDTYMAVAGFRSPGFRRLDKHTELMRQLVSGKTVNLQDIINVKNNDGRTALHVSVMDNIQCELVELLMSVPSIDLNICDADGMTPLDLLKQRARSASSDILIKQMISAGGVSKCQDAVAGNALCTHDKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDTTNYDQASVESYSCSNELSNSDSANSPHNKKSSSVNVRRSKFRLHWPRRRETKAAASELEDDDSLDPFSSSRNLEEFPIPLRQRYSQPCSHPNNKRTQSMRTSLPSPSSNVKFSAGLMQGVIQLKPHSAHSTPSPFQELSVASLFYIKEQKGVDIIGPSCSNGSIDDGTLLLNYKHCSFNKKLMDGYFSFGAQGLAVEDSNSCAKSNSGYKRLSSIVA* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0083 649 Pfam Ankyrin repeats (3 copies) 178 260 IPR002110 GO:0005515
Gso18g0083 649 MobiDBLite consensus disorder prediction 517 540 - -
Gso18g0083 649 ProSiteProfiles Ankyrin repeat profile. 206 238 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 99 128 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 319 350 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 239 268 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 172 202 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 133 163 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 206 235 IPR002110 GO:0005515
Gso18g0083 649 SMART ANK_2a 17 46 IPR002110 GO:0005515
Gso18g0083 649 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 644 - -
Gso18g0083 649 MobiDBLite consensus disorder prediction 480 500 - -
Gso18g0083 649 Gene3D - 57 264 IPR036770 -
Gso18g0083 649 SUPERFAMILY Ankyrin repeat 21 375 IPR036770 -
Gso18g0083 649 ProSiteProfiles Ankyrin repeat region circular profile. 239 260 - -
Gso18g0083 649 MobiDBLite consensus disorder prediction 465 479 - -
Gso18g0083 649 ProSiteProfiles Ankyrin repeat region circular profile. 206 227 - -
Gso18g0083 649 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Gso18g0083 649 Gene3D - 270 379 IPR036770 -
Gso18g0083 649 MobiDBLite consensus disorder prediction 446 464 - -
Gso18g0083 649 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 644 - -
Gso18g0083 649 MobiDBLite consensus disorder prediction 446 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0083 Gso-Chr18 697783 701144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0083 104 361 Miscellaneous Gene Families AT2G31820 30.827 1.07e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0083 - - gmx:100782564 1279.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0083 18 697783 701144 Gso13g1538 13 30795942 30799365 GST
Gso18g0083 18 697783 701144 Gso5g1232 5 35844678 35848050 PCT
Gso18g0083 18 697783 701144 Gso8g0846 8 7863216 7866615 PCT
Gso5g1232 5 35844678 35848050 Gso18g0083 18 697783 701144 PCT
Gso8g0846 8 7863216 7866615 Gso18g0083 18 697783 701144 PCT