Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0589 ATGGCCGTTCAAGCTCAATATCCATCCAATGTCCTTCTTCTAAACAGCAGCAGAAACGGGCAAGAAGAGCATGAGTATTCTTCATTGCAACCACAACCAGGAGGAGTTGTACTCTTGAATCAGCCTCACATGTTATACAACATCAATGACAATGGAAGTAACAATAACAACAACAATACCAATTCTCGGAAGAGAGGTAGAGAAGACCCGGGTGTTGGCAACAACACAATCACTGCAGCTTCTAATGTTATCGATCAATTCTCTTTACAATCTCAGCCTCCGCAACTTGTTCATCTCTCTCAGCTCCACAATCACCACCAACAACAAAATAATGTGGTGTCCACTGGCCTTCGCTTATCCTTCGATGACCAACACTTTCAACAACAACAAAGACTACAACTTCATCAAAATGAATCTCAACAACATAGGTCCCACTCTTCTGCTTTCTTATCTCTATTATCCCAAGGCTTGGGTTCTCAAATCAAACAACAGCGCGATGAGATTGATCAATTGCTCCATGCCCAGGGAGAGCAACTGCGGCGGGCATTGGCGGAGAAGAGGCAGAGACATTACCGCGCGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCGCGACAGCTCAGAGAGAAGGAAGCGGAAGTGGAAATGGCCACGCGCAAGAACGCGGAGTTGGAAGCACGCGCGGCCAAGCTGAGCGTGGAGGCCCAGGTGTGGCAGGCTAAGGCCCGGGCCCAAGAGGCTACGGCAGTCTCCCTCCAGACCAAACTGCAGCAGACGATACTGTCCCACGGCGGCGAAGATCCTGCTGTCGTGGGCGTTTCATCTGCTGCTGTAGAGGGACAGGCGGAGGACGCGGAGTCCGCCTACATCGACCCCGACCGCGTGGTGGCTGCCACGGCGGCGCGTCCCAAATGCCGAGGGTGCGCAAAGCGCGTGGCCTCGGTGGTCGTTTTGCCGTGTCGGCACTTGTGCGTCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACCCCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1056 0.5284 MAVQAQYPSNVLLLNSSRNGQEEHEYSSLQPQPGGVVLLNQPHMLYNINDNGSNNNNNNTNSRKRGREDPGVGNNTITAASNVIDQFSLQSQPPQLVHLSQLHNHHQQQNNVVSTGLRLSFDDQHFQQQQRLQLHQNESQQHRSHSSAFLSLLSQGLGSQIKQQRDEIDQLLHAQGEQLRRALAEKRQRHYRALLSAAEEAVARQLREKEAEVEMATRKNAELEARAAKLSVEAQVWQAKARAQEATAVSLQTKLQQTILSHGGEDPAVVGVSSAAVEGQAEDAESAYIDPDRVVAATAARPKCRGCAKRVASVVVLPCRHLCVCTECDAHFRACPVCLTPKNSTVEVFLS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0589 351 MobiDBLite consensus disorder prediction 46 61 - -
Gso5g0589 351 PIRSF SBP1_RNase_bind 1 351 IPR017066 -
Gso5g0589 351 Pfam Zinc finger, C3HC4 type (RING finger) 303 343 - -
Gso5g0589 351 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 350 - -
Gso5g0589 351 MobiDBLite consensus disorder prediction 46 75 - -
Gso5g0589 351 ProSiteProfiles Zinc finger RING-type profile. 304 338 IPR001841 -
Gso5g0589 351 Coils Coil 199 240 - -
Gso5g0589 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 351 IPR013083 -
Gso5g0589 351 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 350 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0589 Gso-Chr5 6943065 6945211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0589 304 351 Miscellaneous Gene Families AT4G39050 33.333 2.23e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0589 K19042 - gmx:100788122 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0589 5 6943065 6945211 Gso17g1274 17 12510424 12512964 GST
Gso1g1734 1 54157796 54160215 Gso5g0589 5 6943065 6945211 PCT
Gso11g0342 11 2868577 2870934 Gso5g0589 5 6943065 6945211 PCT
Gso5g0589 5 6943065 6945211 Gso1g1734 1 54157796 54160215 PCT
Gso5g0589 5 6943065 6945211 Gso11g0342 11 2868577 2870934 PCT