Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0342 ATGGGCGCCGTTCAAGCTCAATATCCCTCCAATGTACTTTTCCTAAACAGCAAAACCGGGCAAGAAGCACATGATTATTCATTGCAATCTCCGCCAGGACAACAACTCCTTGATCAATCCCATATGCTATTCAACAACGGAGGTACTAATTCTCGAAAGAGAGGAAGAGAAACAACAACAGCAGCAGCTACCGGGATTGCGCCAAACGTTATCAACTCATTCTCTTTACAATCCCAATCTCCACAGGCACAACTCATAGACCTCACTCAACTTCATAATCATAATCAAAATGTAGTCTCCACCGGGTTACGCTTATCCTTTGGCGACCAACAACAACAAAGACAGCAATTACAACATCATCAACAACAGCATGGGTGTCACTCCTCTCCTTTCATATCTCTATTATCCGAAGAAGGCTTGTCTTCTCAAATCAAACAACAGCGTGACGAAATAGACCAATTCCTTCAAGCCCATGGGGAGCAATTGCGGCGGACATTAGCGGAGAAGAGGCAGAGACATTATCGGACGCTGCTAAGAGCAGCGGAGGAATCAGTGTTGCGGAGGCTGAGGGAGAAGGAAGCGGAGGTGGAGAAAGCCACGCGCCGCAATGCGGAGTTGGAGGCACGCGCGGCGCAGCTTAGCGTGGAGGCACAGCTTTGGCAGGCCAAGGCCAAGGCGCAGGAAGCGACGGCGGCGGCGTTGCAGGCGCAGCTGCACCAGGCTATGATGAGCAGCGGCGGCGGTGAGGACGGTGGTGGGGGAGGGCTATCGTGCGCCGGGGGCGAAGCGGAGGATGCTGAGTCAGCGTACGTTGACCCGGAGCGAGTGGGTCCCACTCCGAAATGTAGAGGGTGTGCGAAACGGGTGGCTTCGGTGGTGGTGTTGCCGTGTCGCCACCTATGCATCTGCGCCGAATGCGACGGGCATTTTCGGGCTTGCCCTGTTTGCCTCACCGTTAAAAATTCAACCATCCAAGTCTATCTATCTTAG 990 0.5313 MGAVQAQYPSNVLFLNSKTGQEAHDYSLQSPPGQQLLDQSHMLFNNGGTNSRKRGRETTTAAATGIAPNVINSFSLQSQSPQAQLIDLTQLHNHNQNVVSTGLRLSFGDQQQQRQQLQHHQQQHGCHSSPFISLLSEEGLSSQIKQQRDEIDQFLQAHGEQLRRTLAEKRQRHYRTLLRAAEESVLRRLREKEAEVEKATRRNAELEARAAQLSVEAQLWQAKAKAQEATAAALQAQLHQAMMSSGGGEDGGGGGLSCAGGEAEDAESAYVDPERVGPTPKCRGCAKRVASVVVLPCRHLCICAECDGHFRACPVCLTVKNSTIQVYLS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0342 329 ProSiteProfiles Zinc finger RING-type profile. 282 316 IPR001841 -
Gso11g0342 329 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 3 328 IPR017066 -
Gso11g0342 329 Coils Coil 179 237 - -
Gso11g0342 329 Pfam Zinc finger, C3HC4 type (RING finger) 281 318 - -
Gso11g0342 329 PIRSF SBP1_RNase_bind 1 329 IPR017066 -
Gso11g0342 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 329 IPR013083 -
Gso11g0342 329 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 3 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0342 Gso-Chr11 2868577 2870934 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0342 K19042 - gmx:100779548 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1734 1 54157796 54160215 Gso11g0342 11 2868577 2870934 GST
Gso11g0342 11 2868577 2870934 Gso5g0589 5 6943065 6945211 PCT
Gso11g0342 11 2868577 2870934 Gso17g1274 17 12510424 12512964 PCT
Gso5g0589 5 6943065 6945211 Gso11g0342 11 2868577 2870934 PCT
Gso17g1274 17 12510424 12512964 Gso11g0342 11 2868577 2870934 PCT