Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1274 ATGGCCGTTCAAGCTCAATATCCATCCAATGTCCTTTTTCTAAACAGCAGCAGAAACGGGCAAGAAGGGCATGAGTATTCTTCATTGCAACCACAACCAGGAGGAGTTGTACTCTTGAATCAGCCTCACATGTTATACGACAACTGCAACAACGACAATGGAAGTAACAATAACAACAACAATATCAATTCTCGAAAGAGAGGAAGAGAAGATCAGCCGGGTGTTGGCAACAACAACAACAACACAATCACTACAGCTTCAAATGTTATCAATCAATTTTCTTTGCAATCTCAGCCTCTGCAACTCGTTCATCTCTCTCAGCTCCACAATCACCAACAACAAAATAATGTGGTCTCCACTGGCCTACGCTTATCCTTCGATGACCAACACTTTCAACAACAACAAAGACTACAACTTCATCAAAATCAATCTCAACAACAACAACAACATGGGTCTCAATCTTCTGCTTTCTTATCTCTATTATCCCAAGGCTTGGGTTCTCAAATCAAACAACAGCGTGATGAGATTGACCAATTACTCCATGCCCAGGCAGAGCAACTGCGGCGGGCATTGGCTGAGAAGAGGCAGAGGCATTACCGCGCGCTGCTGAGCACGGCGGAGGAGGCGGTGGCGCGTAGGCTCAGAGAGAAGGAAGCGGAAGTGGAAATGGCCACGCGCAAGAACGCGGAATTAGAAGCACGCGCGGCCAAGCTGAGCGTGGAGGCCCAAGTGTGGCAGGCCAAGGCCAGGGCCCAAGAGGCGACGGCAGCCTCCCTCCAGGCCCAACTGCAGCAGACAATAATGTCCCATGGCGGCGAAGAACTCGCCGCCGTGGGCGTATCGTCTGCTGTTGAGGGCCAGGCGGAAGACGCGGAGTCCGCCTACATCGACCCGGAACGTGTCGTTGTTGCCACGACGGCGCGTCCCAAATGCCGAGGGTGCGCAAAGCGCGTGGCCTCGGTGGTCGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCGGTTTGTCTCACCCTAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTGA 1077 0.5144 MAVQAQYPSNVLFLNSSRNGQEGHEYSSLQPQPGGVVLLNQPHMLYDNCNNDNGSNNNNNNINSRKRGREDQPGVGNNNNNTITTASNVINQFSLQSQPLQLVHLSQLHNHQQQNNVVSTGLRLSFDDQHFQQQQRLQLHQNQSQQQQQHGSQSSAFLSLLSQGLGSQIKQQRDEIDQLLHAQAEQLRRALAEKRQRHYRALLSTAEEAVARRLREKEAEVEMATRKNAELEARAAKLSVEAQVWQAKARAQEATAASLQAQLQQTIMSHGGEELAAVGVSSAVEGQAEDAESAYIDPERVVVATTARPKCRGCAKRVASVVVLPCRHLCICTECDAHFRACPVCLTLKNSTVEVFLS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1274 358 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 357 IPR017066 -
Gso17g1274 358 MobiDBLite consensus disorder prediction 49 83 - -
Gso17g1274 358 MobiDBLite consensus disorder prediction 49 63 - -
Gso17g1274 358 PIRSF SBP1_RNase_bind 1 358 IPR017066 -
Gso17g1274 358 Coils Coil 207 248 - -
Gso17g1274 358 ProSiteProfiles Zinc finger RING-type profile. 311 345 IPR001841 -
Gso17g1274 358 MobiDBLite consensus disorder prediction 136 155 - -
Gso17g1274 358 MobiDBLite consensus disorder prediction 15 36 - -
Gso17g1274 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 358 IPR013083 -
Gso17g1274 358 Pfam Zinc finger, C3HC4 type (RING finger) 310 346 - -
Gso17g1274 358 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1274 Gso-Chr17 12510424 12512964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1274 311 347 Miscellaneous Gene Families AT2G21380 37.838 2.06e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1274 K19042 - gmx:100788924 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0589 5 6943065 6945211 Gso17g1274 17 12510424 12512964 GST
Gso1g1734 1 54157796 54160215 Gso17g1274 17 12510424 12512964 PCT
Gso11g0342 11 2868577 2870934 Gso17g1274 17 12510424 12512964 PCT
Gso17g1274 17 12510424 12512964 Gso1g1734 1 54157796 54160215 PCT
Gso17g1274 17 12510424 12512964 Gso11g0342 11 2868577 2870934 PCT