Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1734 ATGGCCGTTCAAGCTCAATACCCTTCCAATGTACTACTCTTCCTAAACAGCAAAACCGGGCAAGAAGCACATGATTATTCATTGCAATCTCCGCCAGGACAACAACTCCTTGATCAATCCCATATGCTATTCAACAACGGAGGTACTAATTCTCGAAAGAGAGGAAGAGAAACAACTGCAGCTACCGGGATTGCGCCAAACTTTATCAATTCATTCTCTTTGCAATCCCAATCTCCACAGGCACAGCTCATAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCCACCGGGTTACGCTTATCCTTTGGTGACCAACAACAACAAAGACAACAATTACAACATCAACATCAACATCATGGGTGTCACTCCTCTCCTTTCGTATCTCTACTATCCGAAGGCTTGTCTTCTCAAATCAAACAACAGCGTGACGAAATAGACCAATTCCTTCAAGCCCAGGAGGAGCAATTGCGGCGGGCATTAGCGGAGAAGAGACAGAGACATTATCGGACGCTGCTAAGGGCAGCGGAGGAATCGGTGTTGCGGAGGCTGAGGGAGAAGGAAGCGGAGTTGGAGAAAGCCACGCGCCATAACGCGGAGTTGGAGGCACGCGCGACGCAGCTTAGCGTTGAGGCGCAGCTTTGGCAGGCGAGGGCGAAGGCGCAGGAAGCAACGGCGGCGGCGTTGCAGGCGCAGCTGCAGCAGGCTATGATGAGCGGCGACGGTGAGAACGGTGGCGGGGGAGGGCTATCGTGCGCCGGGGGCGGAGCGGAGGATGCTGAGTCAGCGTACGTTGACCCGGATCGAGTGGGTCCCACTCCGAAATGCAGAGGGTGCGCGAAACGGGTGGCTTCGGTGGTGGTGTTGCCGTGTCGCCACCTATGCATCTGCGCCGAATGCGACACGCATTTTCGGGCGTGCCCCGTTTGCCTCACCGTTAAAAATTCAACCGTTGAAGTCTATCTATCTTAA 972 0.5319 MAVQAQYPSNVLLFLNSKTGQEAHDYSLQSPPGQQLLDQSHMLFNNGGTNSRKRGRETTAATGIAPNFINSFSLQSQSPQAQLIDLTQLHNQNVVSTGLRLSFGDQQQQRQQLQHQHQHHGCHSSPFVSLLSEGLSSQIKQQRDEIDQFLQAQEEQLRRALAEKRQRHYRTLLRAAEESVLRRLREKEAELEKATRHNAELEARATQLSVEAQLWQARAKAQEATAAALQAQLQQAMMSGDGENGGGGGLSCAGGGAEDAESAYVDPDRVGPTPKCRGCAKRVASVVVLPCRHLCICAECDTHFRACPVCLTVKNSTVEVYLS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1734 323 ProSiteProfiles Zinc finger RING-type profile. 276 310 IPR001841 -
Gso1g1734 323 PIRSF SBP1_RNase_bind 1 323 IPR017066 -
Gso1g1734 323 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 322 - -
Gso1g1734 323 Pfam Zinc finger, C3HC4 type (RING finger) 275 312 - -
Gso1g1734 323 Coils Coil 139 163 - -
Gso1g1734 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 323 IPR013083 -
Gso1g1734 323 Coils Coil 174 239 - -
Gso1g1734 323 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 322 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1734 Gso-Chr1 54157796 54160215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1734 276 312 Miscellaneous Gene Families AT2G21380 37.838 5.32e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1734 K19042 - gmx:100797727 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1734 1 54157796 54160215 Gso11g0342 11 2868577 2870934 GST
Gso1g1734 1 54157796 54160215 Gso5g0589 5 6943065 6945211 PCT
Gso1g1734 1 54157796 54160215 Gso17g1274 17 12510424 12512964 PCT
Gso5g0589 5 6943065 6945211 Gso1g1734 1 54157796 54160215 PCT
Gso17g1274 17 12510424 12512964 Gso1g1734 1 54157796 54160215 PCT