Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0340 ATGGCTAAACTTGCAGTTCCACCTTTGCTTTCTCTGAGGCACTTCCTGGTGCTATCAATTGCTTTGAATGTGAGTTTGATTCTGAGGACTGTGTATTATGAGAGTGAAAAAGGAAGCAAAGGGTTTTGTTTGAACAAAAAAATGATGGCAGATGCAGATTCTGATAGAGAGGGGCATCTTATCCACAAATCACGTTTGGCCATGTCCTCTACTTCGTCTCTCGTTAATTCTACTCGTGCAGATCATCCAGGAGGAAGGGAAACAGTGATCAACTTGGACCATGGAGACCCAACAATATATGAAAGATTTTGGAGACAAGTGGGTGACAAGACCACAATCATAATTCCAGGATGGCAATCCTTGAGTTATTTTTCTGATGGCTCAAACATTTGCTGGTTTTTAGAGACCGAATTTGCAAGGGAAGTAGTGAGGTTACACAAAGTGGTGGGTAACGCTGTGACAGAAGGTCGCCATATTGTTGTTGGGACAGGTTCCTCTCAGCTAATTCTGGCTGCCCTTTATGCTCTGTCCTCGCCTGATGCTGCTGAACCAATCAGCGTGGTATCTGCCGCACCCTATTATTCGTCTTACCCATCAATGGCAGATTACCAGAAATCAGGACTTTATAAATGGGCTGGTGATGCAGAGAATTTTGACAAAGAGGGTCCTTATATTGAGCTTGTTACTTCTCCCAATAACCCTGATGGACATAGAAGGAAAGCAATGGTCAACCGAAGCCAGGGACAATTCATTCATGACCTTGCCTATTATTGGCCTCAATACACTCCAATATCATCCCCTTCAGATCATGATCTCACTCTTTTCACTGTCTCAAAAACCACTGGTCATGCAGGAATGCGCATAGGGTGGGCTATTGTCAAAGATAAAGAGGTAGCAAAGAAAATGACTAAATTCATAGAGATAAGTACAATCGGTGTCTCGAAGGATTCTCAACTCAGAGCTGCCAAGGTTTTAAAGGCAGTGTCAGACAGCTGCGAACAAGAAAACTCCCAAGATGGGGAATCATTTTTCACGCACAGCTATAACATAATGGCCCAAAGATGGAAGCAACTGAGAGCAGTAGTTGAGGCCGGTGATTTGTTCACTTTGCCACAATTTTCTCCTGCATTCTGCACCTTCTTTGGTCAGGAGACGGAGCCTCAACCAGCTTTCATATGGTTGAAGTGTGAAGGAGATATAGAGGACTGCGAAAACTTGCTTCGAGAACACAAAATTGTAGCAAGAAGTGGGAGACACTTTGGGGCTAGCCCAAAATACGTAAGAATTAGCATGCTGGATACTGATGAAACTTTTATACAGTTAATAGATAGACTATCAGCCATACAACAAGGAAAATGA 1359 0.4312 MAKLAVPPLLSLRHFLVLSIALNVSLILRTVYYESEKGSKGFCLNKKMMADADSDREGHLIHKSRLAMSSTSSLVNSTRADHPGGRETVINLDHGDPTIYERFWRQVGDKTTIIIPGWQSLSYFSDGSNICWFLETEFAREVVRLHKVVGNAVTEGRHIVVGTGSSQLILAALYALSSPDAAEPISVVSAAPYYSSYPSMADYQKSGLYKWAGDAENFDKEGPYIELVTSPNNPDGHRRKAMVNRSQGQFIHDLAYYWPQYTPISSPSDHDLTLFTVSKTTGHAGMRIGWAIVKDKEVAKKMTKFIEISTIGVSKDSQLRAAKVLKAVSDSCEQENSQDGESFFTHSYNIMAQRWKQLRAVVEAGDLFTLPQFSPAFCTFFGQETEPQPAFIWLKCEGDIEDCENLLREHKIVARSGRHFGASPKYVRISMLDTDETFIQLIDRLSAIQQGK* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0340 452 PANTHER TRYPTOPHAN AMINOTRANSFERASE-LIKE PROTEIN 1 451 - -
Gso5g0340 452 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 451 - -
Gso5g0340 452 Pfam Allinase 90 448 IPR006948 GO:0016846
Gso5g0340 452 SUPERFAMILY PLP-dependent transferases 86 446 IPR015424 -
Gso5g0340 452 Gene3D - 134 338 IPR015421 GO:0003824
Gso5g0340 452 CDD AAT_like 137 445 - -
Gso5g0340 452 Gene3D Aspartate Aminotransferase, domain 1 341 449 IPR015422 GO:0003824
Gso5g0340 452 Gene3D - 77 130 IPR037029 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0340 Gso-Chr5 3554771 3561912 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0340 K16903 - gmx:100777098 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0340 5 3554771 3561912 Gso17g0728 17 6686699 6693549 GST
Gso5g0340 5 3554771 3561912 Gso4g1571 4 45228794 45243363 PCT
Gso5g0340 5 3554771 3561912 Gso6g1510 6 15283391 15292145 PCT
Gso4g1571 4 45228794 45243363 Gso5g0340 5 3554771 3561912 PCT
Gso6g1510 6 15283391 15292145 Gso5g0340 5 3554771 3561912 PCT