Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g0264 ATGCATCAACCCCAACACAATGCCAACAACAAGAACAAAAACGACGTCGTCAGGGTCACCACCAACCTGAAACGAATTCTGAAGCCCAAAGCAGAGATGAAAAGAGGGAGAACAGGCAAGTTCGACAATTTGGTCGCACTGAGCAGACAACGATCCATTCAGATTCTCATCGCCATTGCGCTCTTGTACGTCCTCTTCCTCACCCTCGAAATCCCCTTCGTCTTCAGAACCGCCCAACAACCCACTCACACCCGCCGTCAACTCGTTCGCCGCCAAAACGGCGTCGTCTCCGCCTTGGTCCTAAACGACGCCGCGTTCGATTCGGAGCTCTACCAATCCGCCTGCCGCGCGGGAAAGACCGTCTGGGAGGAACTAAGATCAGGAAGCCCGCCGGGCCCCATTCCGAGTCCTGAGAATCGATCCGGGCCGTGTCCGGAATCCGTTTCGGTGTCCGGGCCCGAGTTTCTGGGCCGCGGAAGTGTGATGGTGATTCCGTGTGGGCTCACGTTGGGGTCCCACGTAACGGTGGTTGGGAAGCCGTTAAGGGCGCAACGGAAGACGTGTCAGTTCGTGATGGAGTTGCAGGGGCTGAAAACGGTGGAGGGTGAGGAACCGCCTAGGGTGATGCATTTCAACCCTAGGTTGAAAGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCATTGCGCTGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGGTGAAGTGTGAGAAGTGGATTAGGGGTGATGATGATGATAGGGATGCAGTGGAGACCAAGGCAGCGTGGTGGTTGAAGAGATTGATAGGGCGGCCAAAACGAGTAACAGTTGACTGGCCATTTCCATTTTCTGAGAACAAGCTATTTATTCTTACTCTTAGTGCTGGATTGGGGGGTTACCATATTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCACACTGGATTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCCTCTTTGCCTTCGGTGCATCCCAATGTTTCTTCGCAGCAACATCTTGAATTTTCAACCAGATGGCGTGCCCCGAATCTTCCTCGCTATGGTGTGGAATTGTTTGTAGGGATCCTTTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAGTCTTCTAAAGTGGTCGCTCGTTTCTTTGTAGCACTGCACCCGAGGAAGGAAATTAATGTGGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATTGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAAAGTTGATGCTGTTATGAATCAAGCAAGGAATGTTCCACGTTCTATGAGCTTTTATATTGGGAACATTAATTACCGTCACAAACCCTTGCGCCGTGGTAAATGGGCTGTGACATATAAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCTAATGGACCGGGTTATGTTTTGTCTTCTGATATTGCACACTACATTGTATCTGAATTTGAGATGAATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAGTTTAACCGGACGAAACCGGTAAACTATTTGCATAGCTTCAAGTTCTGCCAATACGGTTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATGTGCCTGTGGGACAAATTGCAGATGCAGACAACGCCTGAGTGCTGCAACATGAGATAA 1908 0.4848 MHQPQHNANNKNKNDVVRVTTNLKRILKPKAEMKRGRTGKFDNLVALSRQRSIQILIAIALLYVLFLTLEIPFVFRTAQQPTHTRRQLVRRQNGVVSALVLNDAAFDSELYQSACRAGKTVWEELRSGSPPGPIPSPENRSGPCPESVSVSGPEFLGRGSVMVIPCGLTLGSHVTVVGKPLRAQRKTCQFVMELQGLKTVEGEEPPRVMHFNPRLKGDWSGKPVIELNTCYRMHWGTALRCDGWKSRAGEDTVDGLVKCEKWIRGDDDDRDAVETKAAWWLKRLIGRPKRVTVDWPFPFSENKLFILTLSAGLGGYHINVDGRHVTSFPYHTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSSQQHLEFSTRWRAPNLPRYGVELFVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVARFFVALHPRKEINVELKKEAEYFGDIVIVPYIDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFVKVDAVMNQARNVPRSMSFYIGNINYRHKPLRRGKWAVTYKEWPEEEYPPYANGPGYVLSSDIAHYIVSEFEMNKLRLFKMEDVSMGMWVEQFNRTKPVNYLHSFKFCQYGCVEGYYTAHYQSPRQMMCLWDKLQMQTTPECCNMR* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g0264 635 Pfam Galactosyltransferase 402 582 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso5g0264 635 CDD GLECT 164 354 IPR001079 GO:0030246
Gso5g0264 635 Pfam Galactoside-binding lectin 161 354 IPR001079 GO:0030246
Gso5g0264 635 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 160 356 IPR001079 GO:0030246
Gso5g0264 635 Gene3D - 280 354 - -
Gso5g0264 635 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 99 635 - -
Gso5g0264 635 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 41 83 - -
Gso5g0264 635 SUPERFAMILY Concanavalin A-like lectins/glucanases 162 354 IPR013320 -
Gso5g0264 635 Gene3D - 386 631 - -
Gso5g0264 635 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 41 83 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso5g0264 635 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 99 635 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso5g0264 635 SMART Gal_bind_lectin_2 164 355 IPR001079 GO:0030246
Gso5g0264 635 MobiDBLite consensus disorder prediction 124 148 - -
Gso5g0264 635 Gene3D - 160 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g0264 Gso-Chr5 2742287 2746284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g0264 28 635 Glycosyltransferase AT1G74800 60.475 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g0264 K20843 - gmx:100800292 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0264 5 2742287 2746284 Gso17g0800 17 7480527 7484435 GST
Gso5g0264 5 2742287 2746284 Gso4g1476 4 43416453 43420247 PCT
Gso5g0264 5 2742287 2746284 Gso6g1585 6 16467652 16471517 PCT
Gso4g1476 4 43416453 43420247 Gso5g0264 5 2742287 2746284 PCT
Gso6g1585 6 16467652 16471517 Gso5g0264 5 2742287 2746284 PCT