Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0800 ATGAAAAGAGGGAACAATTTGGTCGCATTGAGCAGACAACGATCCATTCAGATTCTCATCGCCATTGCGTTCTTGTACGTCCTCTTCTTCACCCTCGAAATCCCCCTCGTCTTCAGAATCGCCCAAAAACAACGACCCACTCACACCCGCCGTCAACTCGTTCGCCGCCAAAACGGCGTCGTCTCCGCCTTGATCCTAAACGACGCCGCGTTCGATTCGGAGCTCTACCAATCCTCCTGCCGCGCCGGAAAAGCCATCTGGGAAGAACTAAAACTAAAATCACGGAGCCCGCGAGGCCTCATTTCTAAGCCCGAGAACCGATCTGGGCCGTGCCCGGGATCCGTCTCCGTGTCCGGGCCCGAGTTTCTGGGCCGCGGGAGTTTGATGATGATTCCGTGTGGGCTTACGTTGGGTTCCCACGTAACGGTGGTTGGGAAGCCGTCAAGGGTGCAACGGAAGACGTGTCAGTTCGTGATGGAGTTGCTGGGGCTGAAGACGGTGGAGGGTGAGGAACCGCCCAGGGTGCTACATTTCAACCCTAGGTTGAAAGGGGATTGGAGTTGGAAGCCCGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCCTTGCGATGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGTTGAAGTGTGAGAAGTGGATTAGGGGTGATGAAGATAATAGGGATGCAGTGGAGACCAAGGCAGCGTGGTGGTTGAAGAGATTGATAGGGCGAACAAAACGAGTAAATGTTGACTGGCCATTTCCATTTTCTGAGAACAAGCTATTTATTCTTACTCTTAGTGCTGGATTTGAGGGTTTCCATATTAATGTTGATGGGAGGCATGTGACCTCTTTTCCTTATCGCACTGGATTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCTTCTTTGCCTTCGGTGCATCCTAATGTTTCTTCGCAGCAGCATCTTGAATTTTCAACCAGATGGCGTGCGCCAAATCTTCCTCGCTATGGTGTGGAATTGTTTGTAGGGATCCTTTCAGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAATCTTCTAAAGTGGTCACTCGTTTCTTTGTAGCACTGCACCCGAGGAAAGAAATTAATGTGGAGTTAAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATTGATAACTATGACCTTGTTGTGTTGAAAACGATGGCCATATGTGAATATGGGGTTCACACAGTTTCTGCGGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAAAATTGATGCTGTTATGAATCAAGCAAGGAATGTTCCACGTTCTATGAGCTTTTATATTGGGAACATTAATTACCGACACAAACCCTTGCGCTGGGGTAAATGGGCTGTGACATATAAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCAAATGGACCGGGTTATATTTTGTCTTCTGATATTGCACACTACATTATATCTGAATTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAAAGCAATTTAACAGATCGAAACCGGTAAACTATTTGCATAGCTTCAAGTTCTGCCAATATGGTTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATATGCCTGTGGGATAAATTGCAGATGAAGACAACGCCTGAGTGCTGCAACATGAGATAA 1809 0.4655 MKRGNNLVALSRQRSIQILIAIAFLYVLFFTLEIPLVFRIAQKQRPTHTRRQLVRRQNGVVSALILNDAAFDSELYQSSCRAGKAIWEELKLKSRSPRGLISKPENRSGPCPGSVSVSGPEFLGRGSLMMIPCGLTLGSHVTVVGKPSRVQRKTCQFVMELLGLKTVEGEEPPRVLHFNPRLKGDWSWKPVIELNTCYRMHWGTALRCDGWKSRAGEDTVDGLLKCEKWIRGDEDNRDAVETKAAWWLKRLIGRTKRVNVDWPFPFSENKLFILTLSAGFEGFHINVDGRHVTSFPYRTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSSQQHLEFSTRWRAPNLPRYGVELFVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVTRFFVALHPRKEINVELKKEAEYFGDIVIVPYIDNYDLVVLKTMAICEYGVHTVSAEYIMKGDDDTFVKIDAVMNQARNVPRSMSFYIGNINYRHKPLRWGKWAVTYKEWPEEEYPPYANGPGYILSSDIAHYIISEFEMHKLRLFKMEDVSMGMWVKQFNRSKPVNYLHSFKFCQYGCVEGYYTAHYQSPRQMICLWDKLQMKTTPECCNMR* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0800 602 Pfam Galactosyltransferase 369 549 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso17g0800 602 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 5 47 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso17g0800 602 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 63 602 IPR002659 GO:0006486|GO:0016020|GO:0016758
Gso17g0800 602 SUPERFAMILY Concanavalin A-like lectins/glucanases 129 321 IPR013320 -
Gso17g0800 602 Pfam Galactoside-binding lectin 128 321 IPR001079 GO:0030246
Gso17g0800 602 Gene3D - 247 321 - -
Gso17g0800 602 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 127 323 IPR001079 GO:0030246
Gso17g0800 602 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 5 47 - -
Gso17g0800 602 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5 63 602 - -
Gso17g0800 602 Gene3D - 353 597 - -
Gso17g0800 602 CDD GLECT 131 321 IPR001079 GO:0030246
Gso17g0800 602 SMART Gal_bind_lectin_2 131 322 IPR001079 GO:0030246
Gso17g0800 602 Gene3D - 127 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0800 Gso-Chr17 7480527 7484435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0800 9 602 Glycosyltransferase AT1G74800 60.122 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0800 K20843 - gmx:100798450 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0264 5 2742287 2746284 Gso17g0800 17 7480527 7484435 GST
Gso17g0800 17 7480527 7484435 Gso4g1476 4 43416453 43420247 PCT
Gso17g0800 17 7480527 7484435 Gso6g1585 6 16467652 16471517 PCT
Gso4g1476 4 43416453 43420247 Gso17g0800 17 7480527 7484435 PCT
Gso6g1585 6 16467652 16471517 Gso17g0800 17 7480527 7484435 PCT