Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g2212 ATGATTCTTTTCAGTTTCACCTCCATCGTTTTAATCGCGTTTGGGGCGACGCTGTTCCAGACGGGGCATGCGAAGAAGCTATGGAGAAGAATCGAAGACTGGTTCCACGTGTACCAGTTCTTCAAAGTCCCAGAACTCAACGACACGACGCAGCACAACCACCTATACAGGAAGGTCTCCCTCTACTTACATTCCCTACCTTCCATCGAAGACTCTGACTTCGCCAACCTCATCACTGGCAAGAAGCAAAACGACATCGTCCTCTGCCTCGGCCCAAACCAAACTATCGAGGACCATTTTCTCGGAGCCACACTCTTCTGGTTCAACCAAACCGGAACCTTTCTTCTCAAGATCAGAAAGGTGGACAAGCGGAGAATCCTCCGTCCTTACCTTCAGCACATTCACGCCGTCGCCGACGAAATCGACCAGCGAGGGAAGCGCGACTTGCTTCTCTTCATGAACATCGCCGACGACTACCGACGCTGGAGATCCGTTCCGTTCACGCATCCTTCCACGTTCGACACCGTCGCCATGGAGCCGGATCTCAAAAGCAAAGTTAAATCCGATCTCGAATCGTTCCTCAGAGCGAAGCAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTCTACGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAATTTCCTCTCCTACGACGTCTACGACATCGACCTCTGCAAAATCTCCAGCGATTCGGATCTGAAATCGCTCCTCCTGCAAACGACGCCGAAGTCGGTGGTGGTGATCGAGGACCTGGACCGGTTCCTCGCGGAGAAAACGGCAAGAATAAGCGCGTCGGGGATACTGAACTTCATGGACGCGCTTCTAACCTCGTGTTGCGCTGAAGAGAGGGTTATGGTGTTCACGATGAACACGAAGGAGCATGTTGACCCAAACCTGCTTCGACCGGGTCGGGTCGACGTGCATATTCATTTTCCGCTTTGTGATTTTTCGGCGTTTAAGACGCTTGCGAGTAGTTACCTTGGGGTGAAGGAGCATAAGTTGTTTCCTCAGGTGCAGGAGATTTTTCAAAACGGGGCGAGTTTGAGTCCCGCTGAAATCGGTGAGTTGATGATAGCAAACCGGAACTCACCGAGTCGGGCTATTAAATCGGTTATCACCGCCTTGCAAACGGACGGTGATGGGAGGGGGTGCGGCTTGATCGGACGGCAGACGGAGGACGATGAAATGGATGAACCTGACGGGGTTGTGTGCGGTGAGACTTTCAATACGGTTAAGGATTTGCGGAAACTGTACGGTTTTTTCAGTTTCAGGGTTACTAGAAGATCTTCGTCGTCCAATGCTTCCTTGCCCCCCGCAAGCCCATTGGAAAAAGAATAA 1389 0.527 MILFSFTSIVLIAFGATLFQTGHAKKLWRRIEDWFHVYQFFKVPELNDTTQHNHLYRKVSLYLHSLPSIEDSDFANLITGKKQNDIVLCLGPNQTIEDHFLGATLFWFNQTGTFLLKIRKVDKRRILRPYLQHIHAVADEIDQRGKRDLLLFMNIADDYRRWRSVPFTHPSTFDTVAMEPDLKSKVKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLSYDVYDIDLCKISSDSDLKSLLLQTTPKSVVVIEDLDRFLAEKTARISASGILNFMDALLTSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGLIGRQTEDDEMDEPDGVVCGETFNTVKDLRKLYGFFSFRVTRRSSSSNASLPPASPLEKE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g2212 462 PANTHER BNAC04G00800D PROTEIN 6 429 - -
Gso3g2212 462 Pfam Domain associated at C-terminal with AAA 25 107 IPR025753 -
Gso3g2212 462 Gene3D - 163 326 IPR027417 -
Gso3g2212 462 Pfam ATPase family associated with various cellular activities (AAA) 212 330 IPR003959 GO:0005524|GO:0016887
Gso3g2212 462 Gene3D - 327 393 - -
Gso3g2212 462 SMART AAA_5 207 332 IPR003593 -
Gso3g2212 462 CDD AAA 208 330 - -
Gso3g2212 462 PANTHER BCS1 AAA-TYPE ATPASE 6 429 - -
Gso3g2212 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 391 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g2212 Gso-Chr3 47276274 47278128 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g2212 - K08900 gmx:100776680 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2173 19 50187121 50189016 Gso3g2212 3 47276274 47278128 GST
Gso3g2212 3 47276274 47278128 Gso7g0470 7 4673088 4675102 PCT
Gso3g2212 3 47276274 47278128 Gso16g0176 16 2031555 2033623 PCT
Gso7g0470 7 4673088 4675102 Gso3g2212 3 47276274 47278128 PCT
Gso16g0176 16 2031555 2033623 Gso3g2212 3 47276274 47278128 PCT