Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g2173 ATGTTTCTTTTCATATTTCTCTCAACCCTCGTTTTAATCGCGGTTCGAGCGAAGAAGCTATGGATAGCAATCGAAGACTGGTTCCACGTGTACCAGTTCTTCAAAGTCCCAGAACTCAACGAAACCACGCAGCATAACCACCTCTACAGGAAGGTCTCCCTCTACTTACATTCCCTACCTTCCATCGAAGACTCTGTCTTCGCCAACCTCATCACTGGCAAGAAGCAAAACGACATCGTCCTCTGCCTCGGCCCCAACCAAACCATCCAAGACCACTTTCTCGGAGCCACACTCTTCTGGTTCAACCAAACCGGAACCTTTGTTCTCAAGATCAGAAAGGTTGACAAGCGCCGAATCCTCCGTCCTTACCTTCAGCACATTCACGCCGTCGCCGACGAAATCGACCAGCAAGGGAAGCGCGACTTGCGCCTCTTCATTAACAGCGCCCACGACTTCGGACGCTGGAGATCCGTTCCGTTTACGCATCCTTCCACGTTCGACACCATCGCCATGGAACCGGATCTCAAAACCAAGGTCAAGTCCGATCTCGAATCTTTCCTCAGAGCCAAGCAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTCTACGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAATTTCCTCTCTTACGACGTCTACGAGATCGACCTCTGCAAAATCCCTAACGATTCGGATCTGAAATCGCTCCTCCTCCAATCGACGCCGAAGTCGGTGGTGGTGATCGAGGATCTGGACCGGTTCCTCGCGGACAAAACGGCGAGAATAAGCGCGTCGGGAATACTGAACTTCATGGACGGGCTTTTAACCTCGTGTTGCGCCGAAGAGAGGGTTATGGTGTTCACGATGAACACGAAGGAGCATGTTGACCCGAACCTGCTTCGTCCGGGTCGGGTCGACGTGCATATTCATTTTCCGCTTTGTGATTTTTCGGCGTTTAAAACGCTTGCGAGTAGTTACCTTGGCGTGAAGGAGCATAAGTTGTTTCCTCAGGTGCAGGAGATTTTTCAAAACGGGGCGAGTTTGAGTCCCGCTGAAATCGGTGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGTGCTATTAAATCGGTCATCACCGCCTTGCAAACGGACGGTGATGGGAGGGGGTGCGGCTTGATCGGACGGCAGACGGATGATGATGAAATGGATGAACCTGATGGGGTTGTGTGCGGTGAGGGTCTCCATACGGTTAAGGATTTGCGGAAACTGTACGATTTTTTCAGGTTCAGGGTTACTAGAAGATCTTCGTCGTCCAATGCTTCCTTGCCCGCAAGCCCATTGCGATAA 1359 0.5254 MFLFIFLSTLVLIAVRAKKLWIAIEDWFHVYQFFKVPELNETTQHNHLYRKVSLYLHSLPSIEDSVFANLITGKKQNDIVLCLGPNQTIQDHFLGATLFWFNQTGTFVLKIRKVDKRRILRPYLQHIHAVADEIDQQGKRDLRLFINSAHDFGRWRSVPFTHPSTFDTIAMEPDLKTKVKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLSYDVYEIDLCKIPNDSDLKSLLLQSTPKSVVVIEDLDRFLADKTARISASGILNFMDGLLTSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLASSYLGVKEHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIKSVITALQTDGDGRGCGLIGRQTDDDEMDEPDGVVCGEGLHTVKDLRKLYDFFRFRVTRRSSSSNASLPASPLR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g2173 452 Pfam Domain associated at C-terminal with AAA 22 100 IPR025753 -
Gso19g2173 452 CDD AAA 201 323 - -
Gso19g2173 452 Pfam ATPase family associated with various cellular activities (AAA) 205 323 IPR003959 GO:0005524|GO:0016887
Gso19g2173 452 PANTHER BCS1 AAA-TYPE ATPASE 9 416 - -
Gso19g2173 452 SMART AAA_5 200 325 IPR003593 -
Gso19g2173 452 Gene3D - 156 319 IPR027417 -
Gso19g2173 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 384 IPR027417 -
Gso19g2173 452 PANTHER BNAC04G00800D PROTEIN 9 416 - -
Gso19g2173 452 Gene3D - 320 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g2173 Gso-Chr19 50187121 50189016 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g2173 - K08900 gmx:100805212 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g2173 19 50187121 50189016 Gso3g2212 3 47276274 47278128 GST
Gso19g2173 19 50187121 50189016 Gso7g0470 7 4673088 4675102 PCT
Gso19g2173 19 50187121 50189016 Gso16g0176 16 2031555 2033623 PCT
Gso7g0470 7 4673088 4675102 Gso19g2173 19 50187121 50189016 PCT
Gso16g0176 16 2031555 2033623 Gso19g2173 19 50187121 50189016 PCT