Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0176 ATGTTCCTCGTAATCCTAAGTGTCGTCGTAGGTTTCACGGTTCGGTGGTTGCTGTTCAAAACGGGATTGATGCACACCATAAGAAAACGCTTCCGAAGGGTCGTGGATTGGTGCCACGTGTACCAGTTCCTCAAAGTCCCCGAATTCAACGAAACCAATAATATGCGGCGGAATAACCTTCACCGCAAAGTTTCTCTCTATTTGCATTCCCTTCCTTCCATAGAGGACGCTGACTTCACCAATCTCATAACCGGAAATGACCAAACTGACATCGTTTTGCGCCTCGACCCGAACCAAACCATCGAGGACCGCTTCCTTGGTGCCACACTCTATTGGTTCAACCAAAAAACCGAACCGAACCGGATTTCCACCTTCGTTCTCCAAATCAGAAAAACCGATAAACGTCGCATCCTTCGCCAGTACCTCCGCCACATCAACACTGTCGCCGACGAGATGGAGAACCAAAGCAAGCGCAATTTACGGTTGTTCATGAACGCCTCCGCCGTCGAAGACGGCGGCACACGGTGGAGATCCGTTCCGTTTACTCATCCGGCGATGTTTGAAACGATGGCGATGGAGAAGGATCTGAAGAACAAGATCAAGTCAGATCTCGAATCGTTTCTCAAGGCGAAGCAGTATTACCGGAAAATCGGCCGGGCGTGGAAGCGGAGCTACCTCCTGTACGGTGCCGGAGGCACCGGAAAATCCAGCTTCGTCGCCGCGATGGCTAACTTTCTCCGCTACGACGTGTACGACGTGGATCTCTCCAAGATTCGCGGCGATTCGGATCTGATGTTTCTGTTAACGGAAACGACGGCGAAATCGGTAATCGTGGTGGAGGATCTCGACCGGTTTCTGGAACCGGAGCCGGAGACAGCGACGGCGGTTACCGCGTCGGGGATCCAGAGCTTCATGGACGGAATCGTTAGCGCGTGTTGTGGCGAGGAGAGGGTGATGGTGTTCACGATGAACAGCAAGGAGTGCGTGGACCCGGACCTGCTGCGGCCGGGTCGGGTCGACGTGCACATCCACTTCCCGGTGTGCGATTTCTCGGCGTTCAAGACGCTGGCGAGCAGCTACCTCGGCGTGAGGAAGCACAAGCTGTTCGCGCAGGTGGAGGAGATTTTCCGGCACGGCGCGACTCTCAGCCCCGCGGAGATCAGCGAGTTGATGATCGCGAATCGGACCTCGCCGAGTCGCGCCATCAAATCGGTGATCGGGGCGCTGCAATCGGACGGTGATGGGAGAAGATCGTATGCTGATTCGATCAGACGGCGGATAGAGGGTGATGACGTGGACAAAGCGCCCTGTGGTGGGGACGGGTTCTCTACGGTTAAAGATATCCGGAAGTTGTACGGTTTCTTCAAATTGCGGAACGGCAGAAGAACTTCTCAACAACAGTCTAATTCCTCTCCCCATGATACTTGA 1428 0.5441 MFLVILSVVVGFTVRWLLFKTGLMHTIRKRFRRVVDWCHVYQFLKVPEFNETNNMRRNNLHRKVSLYLHSLPSIEDADFTNLITGNDQTDIVLRLDPNQTIEDRFLGATLYWFNQKTEPNRISTFVLQIRKTDKRRILRQYLRHINTVADEMENQSKRNLRLFMNASAVEDGGTRWRSVPFTHPAMFETMAMEKDLKNKIKSDLESFLKAKQYYRKIGRAWKRSYLLYGAGGTGKSSFVAAMANFLRYDVYDVDLSKIRGDSDLMFLLTETTAKSVIVVEDLDRFLEPEPETATAVTASGIQSFMDGIVSACCGEERVMVFTMNSKECVDPDLLRPGRVDVHIHFPVCDFSAFKTLASSYLGVRKHKLFAQVEEIFRHGATLSPAEISELMIANRTSPSRAIKSVIGALQSDGDGRRSYADSIRRRIEGDDVDKAPCGGDGFSTVKDIRKLYGFFKLRNGRRTSQQQSNSSPHDT* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0176 475 Gene3D - 177 347 IPR027417 -
Gso16g0176 475 CDD AAA 222 346 - -
Gso16g0176 475 Pfam Domain associated at C-terminal with AAA 20 113 IPR025753 -
Gso16g0176 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 404 IPR027417 -
Gso16g0176 475 PANTHER BNAC04G00800D PROTEIN 4 439 - -
Gso16g0176 475 Pfam ATPase family associated with various cellular activities (AAA) 226 346 IPR003959 GO:0005524|GO:0016887
Gso16g0176 475 PANTHER BCS1 AAA-TYPE ATPASE 4 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0176 Gso-Chr16 2031555 2033623 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0176 - K08900 gmx:100792584 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0470 7 4673088 4675102 Gso16g0176 16 2031555 2033623 GST
Gso19g2173 19 50187121 50189016 Gso16g0176 16 2031555 2033623 PCT
Gso3g2212 3 47276274 47278128 Gso16g0176 16 2031555 2033623 PCT
Gso16g0176 16 2031555 2033623 Gso19g2173 19 50187121 50189016 PCT
Gso16g0176 16 2031555 2033623 Gso3g2212 3 47276274 47278128 PCT