Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1885 ATGAAGCATTCTCACATTTTACCACTAGCATCCTGTATCTTTTTCCTTACTTTAGTTATTCTCGTCCAAGCTAGGCATCATTCTCATCATGCAAAACACAAGCACTCACATCCTCATAAATCTTCTAAAACTCCAAAGCCTGCACCACCTCCTAGCCCTCCACATAATCAGAACTATAACAATGCCTCTGGCATTTTCGATTTACGAAAATTTGGAGCAATAGGAGATGGAGAAACAGATGATACAGAGTCATTCAAGATGGCATGGGACAGTGCTTGCCAAAGTGAATCAGCAGTTAATGTTATCCTTGTACCCCAAGGTTTCTCCTTTCTTGTTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGAGTTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCTAAGAACAACAGTAGGCACCAATGGCTGGTCTTTTACCGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCTCATGGGACAACACTCCCAGGACCTTGTGATAGCCCAATTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCATATAGAATCAATCTACATAACAGCTCCAAAACTAAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGACGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGACTGTGTATCCATTGGATCCGGTTGCAATGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTCGAGCCTGTGTTTCAAACATTATGGTGAGAGACTCCTTCATAAAAGTGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTATCTGGAGTGACATTCAGCAATATCCACATGGTTAGTGTAAGAAATCCCATCATAATTGACCAGTTCTACTGCCTCACTAAGGAGTGCACCAACAAGAGCTCTGCAGTATCTGTTTCAAATATTATTTACACAAACATAAAGGGCACTTATGATATAAGGAGCCCCCCCATGCGTTTTGCTTGTAGTGACTCTGTTCCATGCACCAACTTAACACTCTCGGATATTGAGCTTCTTCCTTCTCAAGGAGATATAGTGCATGACCCTTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTAACCATTCCACCGGTTTCTTGCTTGCTTGAGGGCACTCCTCAGTTAGTGTTAGACTATGACATAACTCGTTGCTGA 1389 0.4226 MKHSHILPLASCIFFLTLVILVQARHHSHHAKHKHSHPHKSSKTPKPAPPPSPPHNQNYNNASGIFDLRKFGAIGDGETDDTESFKMAWDSACQSESAVNVILVPQGFSFLVQSTIFTGPCQGVLELKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTLPGPCDSPIAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSFIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKSSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPSQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQLVLDYDITRC* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1885 462 SUPERFAMILY Pectin lyase-like 63 453 IPR011050 -
Gso3g1885 462 Gene3D - 52 446 IPR012334 -
Gso3g1885 462 SMART pbh1 256 277 IPR006626 -
Gso3g1885 462 SMART pbh1 338 359 IPR006626 -
Gso3g1885 462 SMART pbh1 309 330 IPR006626 -
Gso3g1885 462 SMART pbh1 229 255 IPR006626 -
Gso3g1885 462 SMART pbh1 279 299 IPR006626 -
Gso3g1885 462 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Gso3g1885 462 MobiDBLite consensus disorder prediction 29 60 - -
Gso3g1885 462 PANTHER - 6 452 - -
Gso3g1885 462 Pfam Glycosyl hydrolases family 28 93 416 IPR000743 GO:0004650|GO:0005975
Gso3g1885 462 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1885 Gso-Chr3 44409551 44412871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1885 60 462 Glycoside Hydrolase AT1G02460 71.182 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1885 - - gmx:100797770 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1850 19 47201112 47204294 Gso3g1885 3 44409551 44412871 GST
Gso3g1885 3 44409551 44412871 Gso2g0082 2 908661 911394 PCT
Gso3g1885 3 44409551 44412871 Gso10g0089 10 947415 950124 PCT
Gso2g0082 2 908661 911394 Gso3g1885 3 44409551 44412871 PCT
Gso10g0089 10 947415 950124 Gso3g1885 3 44409551 44412871 PCT