Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0089 ATGAGGCATTGTCATATTTTGACACTAGCATTGTCCTTATATTTTCTTGCTTTATTTCTTCCCACCCAAGCTAGGCACCATTACCACAAAAAACACAAGCACACATATTATCATAATGCACCTGAAATTTCACCATCTCCTGCTCCTGCTCCTGCACCTTCTAATGCTTCTGATGAAGCTACTAGTCCTAGCCCCTCTGATAACGAGAACTACCACAATGCATCTAATAGCTTATTCGATGTACGAACATTTGGGGCCATTGGAGATGGAATAACTGATGATACAGAGTCATTCAAAATGGCATGGGACACTGCTTGCCAAAGTGAATCGCCGGTCAAAGTTATCCTTGTTCCCCAAGGTTTCTCCTTCGTTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGTAAGCGTCAATGGCTTGTCTTTTTTAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGAACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTCAGAATTAAGAACAGCCCCCAGTTTCATTTCAGATTTGATGGCTGCGAAAGTGTCCACGTGGAATCAATTTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAGAATATACAATTCAGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATCACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATTACGGTGAGGGATTCGGTTATAAAAGTGTCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGAGCAGGATCAGTATCAGGTGTGACATTCAGTAACATTCACATGGAAAGTGTAAGGAACCCTATTATAGTTGACCAGTTTTACTGCCTCAGTAAGGATTGCTCCAACAAGACCTCTGCAGTCTTTGTAACGGACATAGTTTACACAAACATAAAGGGAACATATGACATAAGGCATCCACCAATGCGTTTTGCTTGCAGTGATTCTGTGCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCTGATCAAGGAGACATAGTGCTTGATCCTTTCTGCTGGAGTGCCTATGGAAACTCTGAGACACTAACCATTCCCCCAGTATTTTGCTTGTTGGAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATAGATCATTGCTGA 1428 0.4272 MRHCHILTLALSLYFLALFLPTQARHHYHKKHKHTYYHNAPEISPSPAPAPAPSNASDEATSPSPSDNENYHNASNSLFDVRTFGAIGDGITDDTESFKMAWDTACQSESPVKVILVPQGFSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFFRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPNGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGAGSVSGVTFSNIHMESVRNPIIVDQFYCLSKDCSNKTSAVFVTDIVYTNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPDQGDIVLDPFCWSAYGNSETLTIPPVFCLLEGLPQSISGNDIDHC* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0089 475 SMART pbh1 292 312 IPR006626 -
Gso10g0089 475 SMART pbh1 351 372 IPR006626 -
Gso10g0089 475 SMART pbh1 242 268 IPR006626 -
Gso10g0089 475 SMART pbh1 269 290 IPR006626 -
Gso10g0089 475 SMART pbh1 322 343 IPR006626 -
Gso10g0089 475 SUPERFAMILY Pectin lyase-like 76 463 IPR011050 -
Gso10g0089 475 ProSitePatterns Polygalacturonase active site. 299 312 IPR000743 GO:0004650|GO:0005975
Gso10g0089 475 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 465 - -
Gso10g0089 475 MobiDBLite consensus disorder prediction 55 72 - -
Gso10g0089 475 Pfam Glycosyl hydrolases family 28 106 428 IPR000743 GO:0004650|GO:0005975
Gso10g0089 475 Gene3D - 63 457 IPR012334 -
Gso10g0089 475 PANTHER - 7 465 - -
Gso10g0089 475 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0089 Gso-Chr10 947415 950124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g0089 75 475 Glycoside Hydrolase AT1G02460 72.277 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0089 - - gmx:100776338 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0082 2 908661 911394 Gso10g0089 10 947415 950124 GST
Gso19g1850 19 47201112 47204294 Gso10g0089 10 947415 950124 PCT
Gso3g1885 3 44409551 44412871 Gso10g0089 10 947415 950124 PCT
Gso10g0089 10 947415 950124 Gso19g1850 19 47201112 47204294 PCT
Gso10g0089 10 947415 950124 Gso3g1885 3 44409551 44412871 PCT