Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0082 ATGAGGCATTCTCATATTTTGACACTAGCATTGTCCTTATATTTTCTTGCTTTATTTCTTCCCACCCAAGCTAGGCACCATTACCACAAAAAACACAAGCACTCATATTATCATAATGCACCTGAAATTTCACCATCTCCTGCTCCTGCACCTTCTAATGCTCCTGATGATGCTTCTAGTCCTAGCCCCTCTGGTAACGAGAACTACCACAATGCATCCAGTAACTTATTCGATGTACGAACATTTGGGGCCATTGGAGATGGAATAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCTTGCGAAAGTGAATCACCGGTCAAAGTTATCCTTGTTCCCCAAGGTTTCTCCTTCGTTATTCAATCTACTATTTTCACAGGTCCTTGTAAAGGTGGCTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAACAGCAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGCAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGAACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGATTGAGGATCAAGAACAGCCCCCAATTCCATTTCAGATTTGATGGCTGCGAAAGTGTCCACGTGGAATCAATTTACATAACCGCTCCAGCGCTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGACGTGAGAATATACAATTCAGTCATTTCTAATGGTGATGACTGCGTGTCCATTGGAGCTGGTTGCCATGATGTTGATATAAAGAACATCACCTGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGGCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCTGGTGTGACATTCAGTAACATTCACATGGAAAGTGTAAGGAACCCTATTATAATTGACCAGTTTTACTGCCTTAGTAAGGATTGCTCCAACAAGACCTCTGCAGTCTTTGTAACGGATATAGTTTACACAAACATAAAGGGTACATATGACATAAGGCATCCACCAATGCGTTTTGCTTGCAGTGACTCTGTACCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCTGCTCAAGGAAACATAGTGCTCGATCCTTTCTGCTGGAGTGCCTATGGAAACTCTGAGACACTAACAATTCCCCCAGTCTTTTGCATGCTGGAAGGCCTTCCTCAGTCCATTTCAGGCAATGACATAGATCATTGCTGA 1422 0.4318 MRHSHILTLALSLYFLALFLPTQARHHYHKKHKHSYYHNAPEISPSPAPAPSNAPDDASSPSPSGNENYHNASSNLFDVRTFGAIGDGITDDTESFKMAWDTACESESPVKVILVPQGFSFVIQSTIFTGPCKGGLVLKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGAKWWDLPCKPHKGPNGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVADNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVTDIVYTNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGNIVLDPFCWSAYGNSETLTIPPVFCMLEGLPQSISGNDIDHC* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0082 473 ProSitePatterns Polygalacturonase active site. 297 310 IPR000743 GO:0004650|GO:0005975
Gso2g0082 473 SUPERFAMILY Pectin lyase-like 74 459 IPR011050 -
Gso2g0082 473 Pfam Glycosyl hydrolases family 28 110 426 IPR000743 GO:0004650|GO:0005975
Gso2g0082 473 PANTHER - 7 463 - -
Gso2g0082 473 SMART pbh1 349 370 IPR006626 -
Gso2g0082 473 SMART pbh1 267 288 IPR006626 -
Gso2g0082 473 SMART pbh1 290 310 IPR006626 -
Gso2g0082 473 SMART pbh1 240 266 IPR006626 -
Gso2g0082 473 SMART pbh1 320 341 IPR006626 -
Gso2g0082 473 MobiDBLite consensus disorder prediction 39 70 - -
Gso2g0082 473 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 7 463 - -
Gso2g0082 473 Gene3D - 63 457 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0082 Gso-Chr2 908661 911394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0082 76 473 Glycoside Hydrolase AT1G02460 73.067 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0082 - - gmx:100792285 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0082 2 908661 911394 Gso2g0082 2 908661 911394 ECH
Gso2g0082 2 908661 911394 Gso10g0089 10 947415 950124 GST
Gso19g1850 19 47201112 47204294 Gso2g0082 2 908661 911394 PCT
Gso3g1885 3 44409551 44412871 Gso2g0082 2 908661 911394 PCT
Gso2g0082 2 908661 911394 Gso19g1850 19 47201112 47204294 PCT
Gso2g0082 2 908661 911394 Gso3g1885 3 44409551 44412871 PCT