Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1850 ATGAAGCATTCTCACATTTTACCATTAGCATTCTGTATATTTTTCCTTACTTTAGTTATTCTCGTCCAAGCTAGGCATCATTCTCATCATACAAAACACAAACACTCACATTCTCATAAATCTTGTAAGACTCCAAAGCCTGCACCACCTCCTAGCCCTCCACATAATGAGAACTATAACAATGCCTCTGGCATTCTTGATGTACGAAAATTTGGAGCAATAGGAGATGGAGAAACAGATGATACAGGATCATTCAAGATGGCATGGGACAGTGCCTGCCAAAGTGAATCAGCAGTTAATGTTATCCTTGTACCACAAGGTTTCTCCTTTCTCATTCAGTCCACTATCTTCACTGGTCCTTGTCAAGGTGTCTTGGTATTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCTAAGAACAACAGTAGGCATCAATGGCTGGTCTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTGCAAGGACTTAGGATAAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCATATAGAATCAATCTACATAACAGCTCCAAAACTAAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGACATGAAAATATACAATTCTGTTATTTCTAATGGTGATGACTGTGTATCCATTGGATCCGGCTGCAACGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCATTGGTAGTCTGGGAAATCACAACTCTCGAGCCTGTGTTTCAAATATTATGGTGAGAGACTCCTTCATAAAAGTGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTATCTGGAGTAACATTCAGCAATATCCACATGGTTAGTGTAAGAAATCCCATCATAATTGACCAGTTCTACTGCCTCACTAAGGAGTGCACCAACAAGACCTCCGCAGTATCTGTTTCAAATATCATTTACACAAACATAAAGGGCACTTATGATATAAGGAGTCCACCTATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGATATTGAGCTTCTTCCTTCTCAAGGAGATATTGTGCATGACCCCTTCTGTTGGAATGCTTATGGAGATTTGGAGACACTAACCATTCCACCGGTTTCTTGCTTGCTTGAGGGCACTCCTCAGTCAGTGTTAGACTATGACATAACTCGTTGCTGA 1344 0.4137 MKHSHILPLAFCIFFLTLVILVQARHHSHHTKHKHSHSHKSCKTPKPAPPPSPPHNENYNNASGILDVRKFGAIGDGETDDTGSFKMAWDSACQSESAVNVILVPQGFSFLIQSTIFTGPCQGVLVLKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNDMKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISIGSLGNHNSRACVSNIMVRDSFIKVTDNGVRIKTWQGGSGSVSGVTFSNIHMVSVRNPIIIDQFYCLTKECTNKTSAVSVSNIIYTNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPSQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVLDYDITRC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1850 447 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 437 - -
Gso19g1850 447 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
Gso19g1850 447 Gene3D - 52 434 IPR012334 -
Gso19g1850 447 Pfam Glycosyl hydrolases family 28 93 401 IPR000743 GO:0004650|GO:0005975
Gso19g1850 447 MobiDBLite consensus disorder prediction 29 60 - -
Gso19g1850 447 PANTHER - 6 437 - -
Gso19g1850 447 SUPERFAMILY Pectin lyase-like 64 437 IPR011050 -
Gso19g1850 447 SMART pbh1 294 315 IPR006626 -
Gso19g1850 447 SMART pbh1 214 240 IPR006626 -
Gso19g1850 447 SMART pbh1 323 344 IPR006626 -
Gso19g1850 447 SMART pbh1 241 262 IPR006626 -
Gso19g1850 447 SMART pbh1 264 284 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1850 Gso-Chr19 47201112 47204294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1850 60 447 Glycoside Hydrolase AT1G02460 69.704 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1850 - - gmx:100778836 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1850 19 47201112 47204294 Gso3g1885 3 44409551 44412871 GST
Gso19g1850 19 47201112 47204294 Gso2g0082 2 908661 911394 PCT
Gso19g1850 19 47201112 47204294 Gso10g0089 10 947415 950124 PCT
Gso2g0082 2 908661 911394 Gso19g1850 19 47201112 47204294 PCT
Gso10g0089 10 947415 950124 Gso19g1850 19 47201112 47204294 PCT